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Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles
Understanding the role of water in governing the kinetics of the self-assembly processes of amphiphilic peptides remains elusive. Here, we use a multistage atomistic-coarse-grained approach, complemented by circular dichroism/infrared spectroscopy and dynamic light scattering experiments to highligh...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4999504/ https://www.ncbi.nlm.nih.gov/pubmed/27554944 http://dx.doi.org/10.1038/ncomms12367 |
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author | Deshmukh, Sanket A. Solomon, Lee A. Kamath, Ganesh Fry, H. Christopher Sankaranarayanan, Subramanian K. R. S. |
author_facet | Deshmukh, Sanket A. Solomon, Lee A. Kamath, Ganesh Fry, H. Christopher Sankaranarayanan, Subramanian K. R. S. |
author_sort | Deshmukh, Sanket A. |
collection | PubMed |
description | Understanding the role of water in governing the kinetics of the self-assembly processes of amphiphilic peptides remains elusive. Here, we use a multistage atomistic-coarse-grained approach, complemented by circular dichroism/infrared spectroscopy and dynamic light scattering experiments to highlight the dual nature of water in driving the self-assembly of peptide amphiphiles (PAs). We show computationally that water cage formation and breakage near the hydrophobic groups control the fusion dynamics and aggregation of PAs in the micellar stage. Simulations also suggest that enhanced structural ordering of vicinal water near the hydrophilic amino acids shifts the equilibrium towards the fibre phase and stimulates structure and order during the PA assembly into nanofibres. Experiments validate our simulation findings; the measured infrared O–H bond stretching frequency is reminiscent of an ice-like bond which suggests that the solvated water becomes increasingly ordered with time in the assembled peptide network, thus shedding light on the role of water in a self-assembly process. |
format | Online Article Text |
id | pubmed-4999504 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-49995042016-09-08 Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles Deshmukh, Sanket A. Solomon, Lee A. Kamath, Ganesh Fry, H. Christopher Sankaranarayanan, Subramanian K. R. S. Nat Commun Article Understanding the role of water in governing the kinetics of the self-assembly processes of amphiphilic peptides remains elusive. Here, we use a multistage atomistic-coarse-grained approach, complemented by circular dichroism/infrared spectroscopy and dynamic light scattering experiments to highlight the dual nature of water in driving the self-assembly of peptide amphiphiles (PAs). We show computationally that water cage formation and breakage near the hydrophobic groups control the fusion dynamics and aggregation of PAs in the micellar stage. Simulations also suggest that enhanced structural ordering of vicinal water near the hydrophilic amino acids shifts the equilibrium towards the fibre phase and stimulates structure and order during the PA assembly into nanofibres. Experiments validate our simulation findings; the measured infrared O–H bond stretching frequency is reminiscent of an ice-like bond which suggests that the solvated water becomes increasingly ordered with time in the assembled peptide network, thus shedding light on the role of water in a self-assembly process. Nature Publishing Group 2016-08-24 /pmc/articles/PMC4999504/ /pubmed/27554944 http://dx.doi.org/10.1038/ncomms12367 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Deshmukh, Sanket A. Solomon, Lee A. Kamath, Ganesh Fry, H. Christopher Sankaranarayanan, Subramanian K. R. S. Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title | Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title_full | Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title_fullStr | Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title_full_unstemmed | Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title_short | Water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
title_sort | water ordering controls the dynamic equilibrium of micelle–fibre formation in self-assembly of peptide amphiphiles |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4999504/ https://www.ncbi.nlm.nih.gov/pubmed/27554944 http://dx.doi.org/10.1038/ncomms12367 |
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