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The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis
[Image: see text] Despite the numerous experimental and theoretical studies on phosphate monoester hydrolysis, significant questions remain concerning the mechanistic details of these biologically critical reactions. In the present work we construct a linear free energy relationship for phosphate mo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4999962/ https://www.ncbi.nlm.nih.gov/pubmed/27471914 http://dx.doi.org/10.1021/jacs.6b06277 |
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author | Duarte, Fernanda Barrozo, Alexandre Åqvist, Johan Williams, Nicholas H. Kamerlin, Shina C. L. |
author_facet | Duarte, Fernanda Barrozo, Alexandre Åqvist, Johan Williams, Nicholas H. Kamerlin, Shina C. L. |
author_sort | Duarte, Fernanda |
collection | PubMed |
description | [Image: see text] Despite the numerous experimental and theoretical studies on phosphate monoester hydrolysis, significant questions remain concerning the mechanistic details of these biologically critical reactions. In the present work we construct a linear free energy relationship for phosphate monoester hydrolysis to explore the effect of modulating leaving group pK(a) on the competition between solvent- and substrate-assisted pathways for the hydrolysis of these compounds. Through detailed comparative electronic-structure studies of methyl phosphate and a series of substituted aryl phosphate monoesters, we demonstrate that the preferred mechanism is dependent on the nature of the leaving group. For good leaving groups, a strong preference is observed for a more dissociative solvent-assisted pathway. However, the energy difference between the two pathways gradually reduces as the leaving group pK(a) increases and creates mechanistic ambiguity for reactions involving relatively poor alkoxy leaving groups. Our calculations show that the transition-state structures vary smoothly across the range of pK(a)s studied and that the pathways remain discrete mechanistic alternatives. Therefore, while not impossible, a biological catalyst would have to surmount a significantly higher activation barrier to facilitate a substrate-assisted pathway than for the solvent-assisted pathway when phosphate is bonded to good leaving groups. For poor leaving groups, this intrinsic preference disappears. |
format | Online Article Text |
id | pubmed-4999962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-49999622016-08-30 The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis Duarte, Fernanda Barrozo, Alexandre Åqvist, Johan Williams, Nicholas H. Kamerlin, Shina C. L. J Am Chem Soc [Image: see text] Despite the numerous experimental and theoretical studies on phosphate monoester hydrolysis, significant questions remain concerning the mechanistic details of these biologically critical reactions. In the present work we construct a linear free energy relationship for phosphate monoester hydrolysis to explore the effect of modulating leaving group pK(a) on the competition between solvent- and substrate-assisted pathways for the hydrolysis of these compounds. Through detailed comparative electronic-structure studies of methyl phosphate and a series of substituted aryl phosphate monoesters, we demonstrate that the preferred mechanism is dependent on the nature of the leaving group. For good leaving groups, a strong preference is observed for a more dissociative solvent-assisted pathway. However, the energy difference between the two pathways gradually reduces as the leaving group pK(a) increases and creates mechanistic ambiguity for reactions involving relatively poor alkoxy leaving groups. Our calculations show that the transition-state structures vary smoothly across the range of pK(a)s studied and that the pathways remain discrete mechanistic alternatives. Therefore, while not impossible, a biological catalyst would have to surmount a significantly higher activation barrier to facilitate a substrate-assisted pathway than for the solvent-assisted pathway when phosphate is bonded to good leaving groups. For poor leaving groups, this intrinsic preference disappears. American Chemical Society 2016-07-29 2016-08-24 /pmc/articles/PMC4999962/ /pubmed/27471914 http://dx.doi.org/10.1021/jacs.6b06277 Text en Copyright © 2016 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Duarte, Fernanda Barrozo, Alexandre Åqvist, Johan Williams, Nicholas H. Kamerlin, Shina C. L. The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis |
title | The
Competing Mechanisms of Phosphate Monoester Dianion
Hydrolysis |
title_full | The
Competing Mechanisms of Phosphate Monoester Dianion
Hydrolysis |
title_fullStr | The
Competing Mechanisms of Phosphate Monoester Dianion
Hydrolysis |
title_full_unstemmed | The
Competing Mechanisms of Phosphate Monoester Dianion
Hydrolysis |
title_short | The
Competing Mechanisms of Phosphate Monoester Dianion
Hydrolysis |
title_sort | the
competing mechanisms of phosphate monoester dianion
hydrolysis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4999962/ https://www.ncbi.nlm.nih.gov/pubmed/27471914 http://dx.doi.org/10.1021/jacs.6b06277 |
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