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Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL

This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired populat...

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Detalles Bibliográficos
Autores principales: Bucur, Anca, van Leeuwen, Jasper, Chen, Njin-Zu, Claerhout, Brecht, de Schepper, Kristof, Perez-Rey, David, Paraiso-Medina, Sergio, Alonso-Calvo, Raul, Mehta, Keyur, Krykwinski, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001740/
https://www.ncbi.nlm.nih.gov/pubmed/27570644
Descripción
Sumario:This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired population. The application leverages our standards-based Semantic Interoperability Solution and a Groovy DSL to provide high expressiveness in the definition of filters and flexibility in their composition into complex selection graphs including splits and merges. Widely-adopted ontologies such as SNOMED-CT are used to represent the semantics of the data and to express concepts in the application filters, facilitating data sharing and collaboration on joint research questions in large communities of clinical users. The application supports patient data exploration and efficient collaboration in multi-site, heterogeneous and distributed data environments.