Cargando…

Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL

This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired populat...

Descripción completa

Detalles Bibliográficos
Autores principales: Bucur, Anca, van Leeuwen, Jasper, Chen, Njin-Zu, Claerhout, Brecht, de Schepper, Kristof, Perez-Rey, David, Paraiso-Medina, Sergio, Alonso-Calvo, Raul, Mehta, Keyur, Krykwinski, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001740/
https://www.ncbi.nlm.nih.gov/pubmed/27570644
_version_ 1782450474175168512
author Bucur, Anca
van Leeuwen, Jasper
Chen, Njin-Zu
Claerhout, Brecht
de Schepper, Kristof
Perez-Rey, David
Paraiso-Medina, Sergio
Alonso-Calvo, Raul
Mehta, Keyur
Krykwinski, Cyril
author_facet Bucur, Anca
van Leeuwen, Jasper
Chen, Njin-Zu
Claerhout, Brecht
de Schepper, Kristof
Perez-Rey, David
Paraiso-Medina, Sergio
Alonso-Calvo, Raul
Mehta, Keyur
Krykwinski, Cyril
author_sort Bucur, Anca
collection PubMed
description This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired population. The application leverages our standards-based Semantic Interoperability Solution and a Groovy DSL to provide high expressiveness in the definition of filters and flexibility in their composition into complex selection graphs including splits and merges. Widely-adopted ontologies such as SNOMED-CT are used to represent the semantics of the data and to express concepts in the application filters, facilitating data sharing and collaboration on joint research questions in large communities of clinical users. The application supports patient data exploration and efficient collaboration in multi-site, heterogeneous and distributed data environments.
format Online
Article
Text
id pubmed-5001740
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher American Medical Informatics Association
record_format MEDLINE/PubMed
spelling pubmed-50017402016-08-26 Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL Bucur, Anca van Leeuwen, Jasper Chen, Njin-Zu Claerhout, Brecht de Schepper, Kristof Perez-Rey, David Paraiso-Medina, Sergio Alonso-Calvo, Raul Mehta, Keyur Krykwinski, Cyril AMIA Jt Summits Transl Sci Proc Articles This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired population. The application leverages our standards-based Semantic Interoperability Solution and a Groovy DSL to provide high expressiveness in the definition of filters and flexibility in their composition into complex selection graphs including splits and merges. Widely-adopted ontologies such as SNOMED-CT are used to represent the semantics of the data and to express concepts in the application filters, facilitating data sharing and collaboration on joint research questions in large communities of clinical users. The application supports patient data exploration and efficient collaboration in multi-site, heterogeneous and distributed data environments. American Medical Informatics Association 2016-07-20 /pmc/articles/PMC5001740/ /pubmed/27570644 Text en ©2016 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Bucur, Anca
van Leeuwen, Jasper
Chen, Njin-Zu
Claerhout, Brecht
de Schepper, Kristof
Perez-Rey, David
Paraiso-Medina, Sergio
Alonso-Calvo, Raul
Mehta, Keyur
Krykwinski, Cyril
Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title_full Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title_fullStr Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title_full_unstemmed Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title_short Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
title_sort cohort selection and management application leveraging standards-based semantic interoperability and a groovy dsl
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001740/
https://www.ncbi.nlm.nih.gov/pubmed/27570644
work_keys_str_mv AT bucuranca cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT vanleeuwenjasper cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT chennjinzu cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT claerhoutbrecht cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT deschepperkristof cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT perezreydavid cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT paraisomedinasergio cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT alonsocalvoraul cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT mehtakeyur cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl
AT krykwinskicyril cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl