Cargando…
Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL
This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired populat...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001740/ https://www.ncbi.nlm.nih.gov/pubmed/27570644 |
_version_ | 1782450474175168512 |
---|---|
author | Bucur, Anca van Leeuwen, Jasper Chen, Njin-Zu Claerhout, Brecht de Schepper, Kristof Perez-Rey, David Paraiso-Medina, Sergio Alonso-Calvo, Raul Mehta, Keyur Krykwinski, Cyril |
author_facet | Bucur, Anca van Leeuwen, Jasper Chen, Njin-Zu Claerhout, Brecht de Schepper, Kristof Perez-Rey, David Paraiso-Medina, Sergio Alonso-Calvo, Raul Mehta, Keyur Krykwinski, Cyril |
author_sort | Bucur, Anca |
collection | PubMed |
description | This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired population. The application leverages our standards-based Semantic Interoperability Solution and a Groovy DSL to provide high expressiveness in the definition of filters and flexibility in their composition into complex selection graphs including splits and merges. Widely-adopted ontologies such as SNOMED-CT are used to represent the semantics of the data and to express concepts in the application filters, facilitating data sharing and collaboration on joint research questions in large communities of clinical users. The application supports patient data exploration and efficient collaboration in multi-site, heterogeneous and distributed data environments. |
format | Online Article Text |
id | pubmed-5001740 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-50017402016-08-26 Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL Bucur, Anca van Leeuwen, Jasper Chen, Njin-Zu Claerhout, Brecht de Schepper, Kristof Perez-Rey, David Paraiso-Medina, Sergio Alonso-Calvo, Raul Mehta, Keyur Krykwinski, Cyril AMIA Jt Summits Transl Sci Proc Articles This paper describes a new Cohort Selection application implemented to support streamlining the definition phase of multi-centric clinical research in oncology. Our approach aims at both ease of use and precision in defining the selection filters expressing the characteristics of the desired population. The application leverages our standards-based Semantic Interoperability Solution and a Groovy DSL to provide high expressiveness in the definition of filters and flexibility in their composition into complex selection graphs including splits and merges. Widely-adopted ontologies such as SNOMED-CT are used to represent the semantics of the data and to express concepts in the application filters, facilitating data sharing and collaboration on joint research questions in large communities of clinical users. The application supports patient data exploration and efficient collaboration in multi-site, heterogeneous and distributed data environments. American Medical Informatics Association 2016-07-20 /pmc/articles/PMC5001740/ /pubmed/27570644 Text en ©2016 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Bucur, Anca van Leeuwen, Jasper Chen, Njin-Zu Claerhout, Brecht de Schepper, Kristof Perez-Rey, David Paraiso-Medina, Sergio Alonso-Calvo, Raul Mehta, Keyur Krykwinski, Cyril Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title | Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title_full | Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title_fullStr | Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title_full_unstemmed | Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title_short | Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL |
title_sort | cohort selection and management application leveraging standards-based semantic interoperability and a groovy dsl |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001740/ https://www.ncbi.nlm.nih.gov/pubmed/27570644 |
work_keys_str_mv | AT bucuranca cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT vanleeuwenjasper cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT chennjinzu cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT claerhoutbrecht cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT deschepperkristof cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT perezreydavid cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT paraisomedinasergio cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT alonsocalvoraul cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT mehtakeyur cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl AT krykwinskicyril cohortselectionandmanagementapplicationleveragingstandardsbasedsemanticinteroperabilityandagroovydsl |