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The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight
In biomedical informatics, assigning drug codes to categories is a common step in the analysis pipeline. Unfortunately, incomplete mappings are the norm rather than the exception with coverage values less than 85% not uncommon. Here, we perform this linking task on a nationwide insurance claims data...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001754/ https://www.ncbi.nlm.nih.gov/pubmed/27570659 |
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author | Homer, Mark L. Palmer, Nathan P. Bodenreider, Olivier Cami, Aurel Chadwick, Laura Mandl, Kenneth D. |
author_facet | Homer, Mark L. Palmer, Nathan P. Bodenreider, Olivier Cami, Aurel Chadwick, Laura Mandl, Kenneth D. |
author_sort | Homer, Mark L. |
collection | PubMed |
description | In biomedical informatics, assigning drug codes to categories is a common step in the analysis pipeline. Unfortunately, incomplete mappings are the norm rather than the exception with coverage values less than 85% not uncommon. Here, we perform this linking task on a nationwide insurance claims database with over 13 million members who were dispensed, according to National Drug Codes (NDCs), over 50,000 unique product forms of medication. The chosen approach employs Cerner Multum’s VantageRx and the U.S. National Library of Medicine’s RxMix. As a result, 94.0% of the NDCs were successfully mapped to categories used by common drug terminologies, e.g., Anatomical Therapeutic Chemical (ATC). Implemented as an SQL database and scripts, the approach is generic and can be setup for a new data set in a few hours. Thus, the method is a viable option for large-scale drug classification. |
format | Online Article Text |
id | pubmed-5001754 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-50017542016-08-26 The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight Homer, Mark L. Palmer, Nathan P. Bodenreider, Olivier Cami, Aurel Chadwick, Laura Mandl, Kenneth D. AMIA Jt Summits Transl Sci Proc Articles In biomedical informatics, assigning drug codes to categories is a common step in the analysis pipeline. Unfortunately, incomplete mappings are the norm rather than the exception with coverage values less than 85% not uncommon. Here, we perform this linking task on a nationwide insurance claims database with over 13 million members who were dispensed, according to National Drug Codes (NDCs), over 50,000 unique product forms of medication. The chosen approach employs Cerner Multum’s VantageRx and the U.S. National Library of Medicine’s RxMix. As a result, 94.0% of the NDCs were successfully mapped to categories used by common drug terminologies, e.g., Anatomical Therapeutic Chemical (ATC). Implemented as an SQL database and scripts, the approach is generic and can be setup for a new data set in a few hours. Thus, the method is a viable option for large-scale drug classification. American Medical Informatics Association 2016-07-20 /pmc/articles/PMC5001754/ /pubmed/27570659 Text en ©2016 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Homer, Mark L. Palmer, Nathan P. Bodenreider, Olivier Cami, Aurel Chadwick, Laura Mandl, Kenneth D. The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title | The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title_full | The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title_fullStr | The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title_full_unstemmed | The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title_short | The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight |
title_sort | drug data to knowledge pipeline: large-scale claims data classification for pharmacologic insight |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001754/ https://www.ncbi.nlm.nih.gov/pubmed/27570659 |
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