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A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform

The Quality Data Model (QDM) is an established standard for representing electronic clinical quality measures on electronic health record (EHR) repositories. The Informatics for Integrated Biology and the Bedside (i2b2) is a widely used platform for implementing clinical data repositories. However,...

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Autores principales: Mo, Huan, Jiang, Guoqian, Pacheco, Jennifer A., Kiefer, Richard, Rasmussen, Luke V., Pathak, Jyotishman, Denny, Joshua C., Thompson, William K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001760/
https://www.ncbi.nlm.nih.gov/pubmed/27570665
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author Mo, Huan
Jiang, Guoqian
Pacheco, Jennifer A.
Kiefer, Richard
Rasmussen, Luke V.
Pathak, Jyotishman
Denny, Joshua C.
Thompson, William K.
author_facet Mo, Huan
Jiang, Guoqian
Pacheco, Jennifer A.
Kiefer, Richard
Rasmussen, Luke V.
Pathak, Jyotishman
Denny, Joshua C.
Thompson, William K.
author_sort Mo, Huan
collection PubMed
description The Quality Data Model (QDM) is an established standard for representing electronic clinical quality measures on electronic health record (EHR) repositories. The Informatics for Integrated Biology and the Bedside (i2b2) is a widely used platform for implementing clinical data repositories. However, translation from QDM to i2b2 is challenging, since QDM allows for complex queries beyond the capability of single i2b2 messages. We have developed an approach to decompose complex QDM algorithms into workflows of single i2b2 messages, and execute them on the KNIME data analytics platform. Each workflow operation module is composed of parameter lists, a template for the i2b2 message, an mechanism to create parameter updates, and a web service call to i2b2. The communication between workflow modules relies on passing keys ofi2b2 result sets. As a demonstration of validity, we describe the implementation and execution of a type 2 diabetes mellitus phenotype algorithm against an i2b2 data repository.
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spelling pubmed-50017602016-08-26 A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform Mo, Huan Jiang, Guoqian Pacheco, Jennifer A. Kiefer, Richard Rasmussen, Luke V. Pathak, Jyotishman Denny, Joshua C. Thompson, William K. AMIA Jt Summits Transl Sci Proc Articles The Quality Data Model (QDM) is an established standard for representing electronic clinical quality measures on electronic health record (EHR) repositories. The Informatics for Integrated Biology and the Bedside (i2b2) is a widely used platform for implementing clinical data repositories. However, translation from QDM to i2b2 is challenging, since QDM allows for complex queries beyond the capability of single i2b2 messages. We have developed an approach to decompose complex QDM algorithms into workflows of single i2b2 messages, and execute them on the KNIME data analytics platform. Each workflow operation module is composed of parameter lists, a template for the i2b2 message, an mechanism to create parameter updates, and a web service call to i2b2. The communication between workflow modules relies on passing keys ofi2b2 result sets. As a demonstration of validity, we describe the implementation and execution of a type 2 diabetes mellitus phenotype algorithm against an i2b2 data repository. American Medical Informatics Association 2016-07-20 /pmc/articles/PMC5001760/ /pubmed/27570665 Text en ©2016 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Mo, Huan
Jiang, Guoqian
Pacheco, Jennifer A.
Kiefer, Richard
Rasmussen, Luke V.
Pathak, Jyotishman
Denny, Joshua C.
Thompson, William K.
A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title_full A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title_fullStr A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title_full_unstemmed A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title_short A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform
title_sort decompositional approach to executing quality data model algorithms on the i2b2 platform
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001760/
https://www.ncbi.nlm.nih.gov/pubmed/27570665
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