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i2b2t2: Unlocking Visualization for Clinical Research
We introduce a tool that extracts clinical data sets and provides visualizations from clinical data warehouses that use the Informatics for Integrating Biology and the Bedside (i2b2) query tool. Our tool, i2b2t2 (i2b2 to Tableau), can extract and visualize any i2b2 query into a portable format that...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001764/ https://www.ncbi.nlm.nih.gov/pubmed/27570658 |
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author | Harris, Daniel R. Henderson, Darren W. |
author_facet | Harris, Daniel R. Henderson, Darren W. |
author_sort | Harris, Daniel R. |
collection | PubMed |
description | We introduce a tool that extracts clinical data sets and provides visualizations from clinical data warehouses that use the Informatics for Integrating Biology and the Bedside (i2b2) query tool. Our tool, i2b2t2 (i2b2 to Tableau), can extract and visualize any i2b2 query into a portable format that researchers can easily explore without needing a highly technical or statistical background. This user-friendly format provides a quick visual summary of the queried population and is easily extendable to develop more intricate and robust visualizations. Extraction and visualization can be provided as a service by clinical data warehouses to expedite the release of data sets for research. i2b2t2 also encourages visualization as a self-service; a motivated researcher can develop custom visualizations for exploration or publication. |
format | Online Article Text |
id | pubmed-5001764 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-50017642016-08-26 i2b2t2: Unlocking Visualization for Clinical Research Harris, Daniel R. Henderson, Darren W. AMIA Jt Summits Transl Sci Proc Articles We introduce a tool that extracts clinical data sets and provides visualizations from clinical data warehouses that use the Informatics for Integrating Biology and the Bedside (i2b2) query tool. Our tool, i2b2t2 (i2b2 to Tableau), can extract and visualize any i2b2 query into a portable format that researchers can easily explore without needing a highly technical or statistical background. This user-friendly format provides a quick visual summary of the queried population and is easily extendable to develop more intricate and robust visualizations. Extraction and visualization can be provided as a service by clinical data warehouses to expedite the release of data sets for research. i2b2t2 also encourages visualization as a self-service; a motivated researcher can develop custom visualizations for exploration or publication. American Medical Informatics Association 2016-07-20 /pmc/articles/PMC5001764/ /pubmed/27570658 Text en ©2016 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Harris, Daniel R. Henderson, Darren W. i2b2t2: Unlocking Visualization for Clinical Research |
title | i2b2t2: Unlocking Visualization for Clinical Research |
title_full | i2b2t2: Unlocking Visualization for Clinical Research |
title_fullStr | i2b2t2: Unlocking Visualization for Clinical Research |
title_full_unstemmed | i2b2t2: Unlocking Visualization for Clinical Research |
title_short | i2b2t2: Unlocking Visualization for Clinical Research |
title_sort | i2b2t2: unlocking visualization for clinical research |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001764/ https://www.ncbi.nlm.nih.gov/pubmed/27570658 |
work_keys_str_mv | AT harrisdanielr i2b2t2unlockingvisualizationforclinicalresearch AT hendersondarrenw i2b2t2unlockingvisualizationforclinicalresearch |