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Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts
The aim of this work was to evaluate the effect of earthworms (Lumbricidae) on the enzymatic activity and microbial functional diversity in the burrow system [burrow wall (BW) 0–3 mm, transitional zone (TZ) 3–7 mm, bulk soil (BS) > 20 mm from the BW] and cast aggregates of a loess soil under a pe...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5004331/ https://www.ncbi.nlm.nih.gov/pubmed/27625645 http://dx.doi.org/10.3389/fmicb.2016.01361 |
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author | Lipiec, Jerzy Frąc, Magdalena Brzezińska, Małgorzata Turski, Marcin Oszust, Karolina |
author_facet | Lipiec, Jerzy Frąc, Magdalena Brzezińska, Małgorzata Turski, Marcin Oszust, Karolina |
author_sort | Lipiec, Jerzy |
collection | PubMed |
description | The aim of this work was to evaluate the effect of earthworms (Lumbricidae) on the enzymatic activity and microbial functional diversity in the burrow system [burrow wall (BW) 0–3 mm, transitional zone (TZ) 3–7 mm, bulk soil (BS) > 20 mm from the BW] and cast aggregates of a loess soil under a pear orchard. The dehydrogenase, β-glucosidase, protease, alkaline phosphomonoesterase, and acid phosphomonoesterase enzymes were assessed using standard methods. The functional diversity (catabolic potential) was assessed using the Average Well Color Development and Richness Index following the community level physiological profiling from Biolog Eco Plates. All measurements were done using soil from each compartment immediately after in situ sampling in spring. The enzymatic activites including dehydrogenase, protease, β-glucosidase and alkaline phosphomonoesterase were appreciably greater in the BW or casts than in BS and TZ. Conversely, acid phosphomonoesterase had the largest value in the BS. Average Well Color Development in both the TZ and the BS (0.98–0.94 A(590 nm)) were more than eight times higher than in the BWs and casts. The lowest richness index in the BS (15 utilized substrates) increased by 86–113% in all the other compartments. The PC1 in principal component analysis mainly differentiated the BWs and the TZ. Utilization of all substrate categories was the lowest in the BS. The PC2 differentiated the casts from the other compartments. The enhanced activity of a majority of the enzymes and increased microbial functional diversity in most earthworm-influenced compartments make the soils less vulnerable to degradation and thus increases the stability of ecologically relevant processes in the orchard ecosystem. |
format | Online Article Text |
id | pubmed-5004331 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-50043312016-09-13 Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts Lipiec, Jerzy Frąc, Magdalena Brzezińska, Małgorzata Turski, Marcin Oszust, Karolina Front Microbiol Microbiology The aim of this work was to evaluate the effect of earthworms (Lumbricidae) on the enzymatic activity and microbial functional diversity in the burrow system [burrow wall (BW) 0–3 mm, transitional zone (TZ) 3–7 mm, bulk soil (BS) > 20 mm from the BW] and cast aggregates of a loess soil under a pear orchard. The dehydrogenase, β-glucosidase, protease, alkaline phosphomonoesterase, and acid phosphomonoesterase enzymes were assessed using standard methods. The functional diversity (catabolic potential) was assessed using the Average Well Color Development and Richness Index following the community level physiological profiling from Biolog Eco Plates. All measurements were done using soil from each compartment immediately after in situ sampling in spring. The enzymatic activites including dehydrogenase, protease, β-glucosidase and alkaline phosphomonoesterase were appreciably greater in the BW or casts than in BS and TZ. Conversely, acid phosphomonoesterase had the largest value in the BS. Average Well Color Development in both the TZ and the BS (0.98–0.94 A(590 nm)) were more than eight times higher than in the BWs and casts. The lowest richness index in the BS (15 utilized substrates) increased by 86–113% in all the other compartments. The PC1 in principal component analysis mainly differentiated the BWs and the TZ. Utilization of all substrate categories was the lowest in the BS. The PC2 differentiated the casts from the other compartments. The enhanced activity of a majority of the enzymes and increased microbial functional diversity in most earthworm-influenced compartments make the soils less vulnerable to degradation and thus increases the stability of ecologically relevant processes in the orchard ecosystem. Frontiers Media S.A. 2016-08-30 /pmc/articles/PMC5004331/ /pubmed/27625645 http://dx.doi.org/10.3389/fmicb.2016.01361 Text en Copyright © 2016 Lipiec, Frąc, Brzezińska, Turski and Oszust. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Lipiec, Jerzy Frąc, Magdalena Brzezińska, Małgorzata Turski, Marcin Oszust, Karolina Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title | Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title_full | Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title_fullStr | Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title_full_unstemmed | Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title_short | Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts |
title_sort | linking microbial enzymatic activities and functional diversity of soil around earthworm burrows and casts |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5004331/ https://www.ncbi.nlm.nih.gov/pubmed/27625645 http://dx.doi.org/10.3389/fmicb.2016.01361 |
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