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Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification
In transfusion medicine, the identification of the Rhesus D type is important to prevent anti-D immunisation in Rhesus D negative recipients. In particular, the detection of the very low expressed DEL phenotype is crucial and hence constitutes the bottleneck of standard immunohaematology. The curren...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007495/ https://www.ncbi.nlm.nih.gov/pubmed/27580632 http://dx.doi.org/10.1038/srep32317 |
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author | Borgmann, Daniela M. Mayr, Sandra Polin, Helene Schaller, Susanne Dorfer, Viktoria Obritzberger, Lisa Endmayr, Tanja Gabriel, Christian Winkler, Stephan M. Jacak, Jaroslaw |
author_facet | Borgmann, Daniela M. Mayr, Sandra Polin, Helene Schaller, Susanne Dorfer, Viktoria Obritzberger, Lisa Endmayr, Tanja Gabriel, Christian Winkler, Stephan M. Jacak, Jaroslaw |
author_sort | Borgmann, Daniela M. |
collection | PubMed |
description | In transfusion medicine, the identification of the Rhesus D type is important to prevent anti-D immunisation in Rhesus D negative recipients. In particular, the detection of the very low expressed DEL phenotype is crucial and hence constitutes the bottleneck of standard immunohaematology. The current method of choice, adsorption-elution, does not provide unambiguous results. We have developed a complementary method of high sensitivity that allows reliable identification of D antigen expression. Here, we present a workflow composed of high-resolution fluorescence microscopy, image processing, and machine learning that - for the first time - enables the identification of even small amounts of D antigen on the cellular level. The high sensitivity of our technique captures the full range of D antigen expression (including D+, weak D, DEL, D−), allows automated population analyses, and results in classification test accuracies of up to 96%, even for very low expressed phenotypes. |
format | Online Article Text |
id | pubmed-5007495 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50074952016-09-07 Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification Borgmann, Daniela M. Mayr, Sandra Polin, Helene Schaller, Susanne Dorfer, Viktoria Obritzberger, Lisa Endmayr, Tanja Gabriel, Christian Winkler, Stephan M. Jacak, Jaroslaw Sci Rep Article In transfusion medicine, the identification of the Rhesus D type is important to prevent anti-D immunisation in Rhesus D negative recipients. In particular, the detection of the very low expressed DEL phenotype is crucial and hence constitutes the bottleneck of standard immunohaematology. The current method of choice, adsorption-elution, does not provide unambiguous results. We have developed a complementary method of high sensitivity that allows reliable identification of D antigen expression. Here, we present a workflow composed of high-resolution fluorescence microscopy, image processing, and machine learning that - for the first time - enables the identification of even small amounts of D antigen on the cellular level. The high sensitivity of our technique captures the full range of D antigen expression (including D+, weak D, DEL, D−), allows automated population analyses, and results in classification test accuracies of up to 96%, even for very low expressed phenotypes. Nature Publishing Group 2016-09-01 /pmc/articles/PMC5007495/ /pubmed/27580632 http://dx.doi.org/10.1038/srep32317 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Borgmann, Daniela M. Mayr, Sandra Polin, Helene Schaller, Susanne Dorfer, Viktoria Obritzberger, Lisa Endmayr, Tanja Gabriel, Christian Winkler, Stephan M. Jacak, Jaroslaw Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title | Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title_full | Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title_fullStr | Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title_full_unstemmed | Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title_short | Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification |
title_sort | single molecule fluorescence microscopy and machine learning for rhesus d antigen classification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007495/ https://www.ncbi.nlm.nih.gov/pubmed/27580632 http://dx.doi.org/10.1038/srep32317 |
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