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Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses

Network analysis through graph theory provides a quantitative approach to characterize specific proteins and their constituent assemblies that underlie host-pathogen interactions. In the present study, graph theory was used to analyze the interactome designed out of 50 differentially expressing prot...

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Autores principales: Ghosh, Sourish, Mukherjee, Sriparna, Sengupta, Nabonita, Roy, Arunava, Dey, Dhritiman, Chakraborty, Surajit, Chattopadhyay, Dhrubajyoti, Banerjee, Arpan, Basu, Anirban
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007645/
https://www.ncbi.nlm.nih.gov/pubmed/27581498
http://dx.doi.org/10.1038/srep32593
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author Ghosh, Sourish
Mukherjee, Sriparna
Sengupta, Nabonita
Roy, Arunava
Dey, Dhritiman
Chakraborty, Surajit
Chattopadhyay, Dhrubajyoti
Banerjee, Arpan
Basu, Anirban
author_facet Ghosh, Sourish
Mukherjee, Sriparna
Sengupta, Nabonita
Roy, Arunava
Dey, Dhritiman
Chakraborty, Surajit
Chattopadhyay, Dhrubajyoti
Banerjee, Arpan
Basu, Anirban
author_sort Ghosh, Sourish
collection PubMed
description Network analysis through graph theory provides a quantitative approach to characterize specific proteins and their constituent assemblies that underlie host-pathogen interactions. In the present study, graph theory was used to analyze the interactome designed out of 50 differentially expressing proteins from proteomic analysis of Chandipura Virus (CHPV, Family: Rhabdoviridae) infected mouse brain tissue to identify the primary candidates for intervention. Using the measure of degree centrality, that quantifies the connectedness of a single protein within a milieu of several other interacting proteins, DJ-1 was selected for further molecular validation. To elucidate the generality of DJ-1’s role in propagating infection its role was also monitored in another RNA virus, Japanese Encephalitis Virus (JEV, Family: Flaviviridae) infection. Concurrently, DJ-1 got over-expressed in response to reactive oxygen species (ROS) generation following viral infection which in the early phase of infection migrated to mitochondria to remove dysfunctional mitochondria through the process of mitophagy. DJ-1 was also observed to modulate the viral replication and interferon responses along with low-density lipoprotein (LDL) receptor expression in neurons. Collectively these evidences reveal a comprehensive role for DJ-1 in neurotropic virus infection in the brain.
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spelling pubmed-50076452016-09-08 Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses Ghosh, Sourish Mukherjee, Sriparna Sengupta, Nabonita Roy, Arunava Dey, Dhritiman Chakraborty, Surajit Chattopadhyay, Dhrubajyoti Banerjee, Arpan Basu, Anirban Sci Rep Article Network analysis through graph theory provides a quantitative approach to characterize specific proteins and their constituent assemblies that underlie host-pathogen interactions. In the present study, graph theory was used to analyze the interactome designed out of 50 differentially expressing proteins from proteomic analysis of Chandipura Virus (CHPV, Family: Rhabdoviridae) infected mouse brain tissue to identify the primary candidates for intervention. Using the measure of degree centrality, that quantifies the connectedness of a single protein within a milieu of several other interacting proteins, DJ-1 was selected for further molecular validation. To elucidate the generality of DJ-1’s role in propagating infection its role was also monitored in another RNA virus, Japanese Encephalitis Virus (JEV, Family: Flaviviridae) infection. Concurrently, DJ-1 got over-expressed in response to reactive oxygen species (ROS) generation following viral infection which in the early phase of infection migrated to mitochondria to remove dysfunctional mitochondria through the process of mitophagy. DJ-1 was also observed to modulate the viral replication and interferon responses along with low-density lipoprotein (LDL) receptor expression in neurons. Collectively these evidences reveal a comprehensive role for DJ-1 in neurotropic virus infection in the brain. Nature Publishing Group 2016-09-01 /pmc/articles/PMC5007645/ /pubmed/27581498 http://dx.doi.org/10.1038/srep32593 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ghosh, Sourish
Mukherjee, Sriparna
Sengupta, Nabonita
Roy, Arunava
Dey, Dhritiman
Chakraborty, Surajit
Chattopadhyay, Dhrubajyoti
Banerjee, Arpan
Basu, Anirban
Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title_full Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title_fullStr Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title_full_unstemmed Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title_short Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
title_sort network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5007645/
https://www.ncbi.nlm.nih.gov/pubmed/27581498
http://dx.doi.org/10.1038/srep32593
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