Cargando…

Predicting essential proteins based on subcellular localization, orthology and PPI networks

BACKGROUND: Essential proteins play an indispensable role in the cellular survival and development. There have been a series of biological experimental methods for finding essential proteins; however they are time-consuming, expensive and inefficient. In order to overcome the shortcomings of biologi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Gaoshi, Li, Min, Wang, Jianxin, Wu, Jingli, Wu, Fang-Xiang, Pan, Yi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009824/ https://www.ncbi.nlm.nih.gov/pubmed/27586883 http://dx.doi.org/10.1186/s12859-016-1115-5

Ejemplares similares

Predicting essential proteins by integrating orthology, gene expressions, and PPI networks
por: Zhang, Xue, et al.
Publicado: (2018)

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks
por: Peng, Wei, et al.
Publicado: (2012)

Identifying essential proteins from active PPI networks constructed with dynamic gene expression
por: Xiao, Qianghua, et al.
Publicado: (2015)

Identifying Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks
por: Li, Min, et al.
Publicado: (2014)

Improving protein function prediction using domain and protein complexes in PPI networks
por: Peng, Wei, et al.
Publicado: (2014)

Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks
por: Peng, Xiaoqing, et al.
Publicado: (2015)

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
por: Li, Min, et al.
Publicado: (2012)

Prediction of essential proteins based on subcellular localization and gene expression correlation
por: Fan, Yetian, et al.
Publicado: (2017)

A methodology for detecting the orthology signal in a PPI network at a functional complex level
por: Jancura, Pavol, et al.
Publicado: (2012)

A comparison of the functional modules identified from time course and static PPI network data
por: Tang, Xiwei, et al.
Publicado: (2011)

iOPTICS-GSO for identifying protein complexes from dynamic PPI networks
por: Lei, Xiujuan, et al.
Publicado: (2017)

Predicting Essential Proteins Based on Integration of Local Fuzzy Fractal Dimension and Subcellular Location Information
por: Shen, Li, et al.
Publicado: (2022)

ABC and IFC: Modules Detection Method for PPI Network
por: Lei, Xiujuan, et al.
Publicado: (2014)

Detecting overlapping protein complexes in PPI networks based on robustness
por: Wang, Shuliang, et al.
Publicado: (2013)

An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information
por: Li, Shiyuan, et al.
Publicado: (2021)

Identification of Protein Subcellular Localization With Network and Functional Embeddings
por: Pan, Xiaoyong, et al.
Publicado: (2021)

A core-attachment based method to detect protein complexes in PPI networks
por: Wu, Min, et al.
Publicado: (2009)

A method for predicting protein complex in dynamic PPI networks
por: Zhang, Yijia, et al.
Publicado: (2016)

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
por: Lee, KiYoung, et al.
Publicado: (2008)

Network-based prediction of metabolic enzymes' subcellular localization
por: Mintz-Oron, Shira, et al.
Publicado: (2009)

Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study
por: Jiang, Jonathan Q, et al.
Publicado: (2012)

Identifying driver pathways based on a parameter-free model and a partheno-genetic algorithm
por: Wu, Jingli, et al.
Publicado: (2023)

LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules
por: Maskey, Sawal, et al.
Publicado: (2019)

Characterization and subcellular localization of Alongshan virus proteins
por: Zhao, Yinghua, et al.
Publicado: (2022)

A novel essential protein identification method based on PPI networks and gene expression data
por: Zhong, Jiancheng, et al.
Publicado: (2021)

GASOLINE: a Cytoscape app for multiple local alignment of PPI networks
por: Micale, Giovanni, et al.
Publicado: (2014)

Meta-prediction of protein subcellular localization with reduced voting
por: Liu, Jie, et al.
Publicado: (2007)

Protein functional properties prediction in sparsely-label PPI networks through regularized non-negative matrix factorization
por: Wu, Qingyao, et al.
Publicado: (2015)

Prediction of Apoptosis Protein Subcellular Localization with Multilayer Sparse Coding and Oversampling Approach
por: Chen, Xingjian, et al.
Publicado: (2019)

From communities to protein complexes: A local community detection algorithm on PPI networks
por: Dilmaghani, Saharnaz, et al.
Publicado: (2022)

Entropy-Based Graph Clustering of PPI Networks for Predicting Overlapping Functional Modules of Proteins
por: Jeong, Hoyeon, et al.
Publicado: (2021)

Clustering PPI data by combining FA and SHC method
por: Lei, Xiujuan, et al.
Publicado: (2015)

Protein Function Prediction Based on PPI Networks: Network Reconstruction vs Edge Enrichment
por: Zhou, Jiaogen, et al.
Publicado: (2021)

SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction
por: Li, Xue, et al.
Publicado: (2022)

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology
por: Ning, Kang, et al.
Publicado: (2010)

Protein-protein interaction networks (PPI) and complex diseases
por: Safari-Alighiarloo, Nahid, et al.
Publicado: (2014)

Protein complexes detection based on node local properties and gene expression in PPI weighted networks
por: Yu, Yang, et al.
Publicado: (2022)

Decomposing PPI networks for complex discovery
por: Liu, Guimei, et al.
Publicado: (2011)

Ranking Cancer Proteins by Integrating PPI Network and Protein Expression Profiles
por: Ren, Jie, et al.
Publicado: (2019)

PPI Finder: A Mining Tool for Human Protein-Protein Interactions
por: He, Min, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_d9su4krsb86uim7g0561bk0kao