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Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
The advent of two-photon microscopy now reveals unprecedented, detailed spatio-temporal data on cellular motility and interactions in vivo. Understanding cellular motility patterns is key to gaining insight into the development and possible manipulation of the immune response. Computational simulati...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010290/ https://www.ncbi.nlm.nih.gov/pubmed/27589606 http://dx.doi.org/10.1371/journal.pcbi.1005082 |
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author | Read, Mark N. Bailey, Jacqueline Timmis, Jon Chtanova, Tatyana |
author_facet | Read, Mark N. Bailey, Jacqueline Timmis, Jon Chtanova, Tatyana |
author_sort | Read, Mark N. |
collection | PubMed |
description | The advent of two-photon microscopy now reveals unprecedented, detailed spatio-temporal data on cellular motility and interactions in vivo. Understanding cellular motility patterns is key to gaining insight into the development and possible manipulation of the immune response. Computational simulation has become an established technique for understanding immune processes and evaluating hypotheses in the context of experimental data, and there is clear scope to integrate microscopy-informed motility dynamics. However, determining which motility model best reflects in vivo motility is non-trivial: 3D motility is an intricate process requiring several metrics to characterize. This complicates model selection and parameterization, which must be performed against several metrics simultaneously. Here we evaluate Brownian motion, Lévy walk and several correlated random walks (CRWs) against the motility dynamics of neutrophils and lymph node T cells under inflammatory conditions by simultaneously considering cellular translational and turn speeds, and meandering indices. Heterogeneous cells exhibiting a continuum of inherent translational speeds and directionalities comprise both datasets, a feature significantly improving capture of in vivo motility when simulated as a CRW. Furthermore, translational and turn speeds are inversely correlated, and the corresponding CRW simulation again improves capture of our in vivo data, albeit to a lesser extent. In contrast, Brownian motion poorly reflects our data. Lévy walk is competitive in capturing some aspects of neutrophil motility, but T cell directional persistence only, therein highlighting the importance of evaluating models against several motility metrics simultaneously. This we achieve through novel application of multi-objective optimization, wherein each model is independently implemented and then parameterized to identify optimal trade-offs in performance against each metric. The resultant Pareto fronts of optimal solutions are directly contrasted to identify models best capturing in vivo dynamics, a technique that can aid model selection more generally. Our technique robustly determines our cell populations’ motility strategies, and paves the way for simulations that incorporate accurate immune cell motility dynamics. |
format | Online Article Text |
id | pubmed-5010290 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-50102902016-09-27 Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection Read, Mark N. Bailey, Jacqueline Timmis, Jon Chtanova, Tatyana PLoS Comput Biol Research Article The advent of two-photon microscopy now reveals unprecedented, detailed spatio-temporal data on cellular motility and interactions in vivo. Understanding cellular motility patterns is key to gaining insight into the development and possible manipulation of the immune response. Computational simulation has become an established technique for understanding immune processes and evaluating hypotheses in the context of experimental data, and there is clear scope to integrate microscopy-informed motility dynamics. However, determining which motility model best reflects in vivo motility is non-trivial: 3D motility is an intricate process requiring several metrics to characterize. This complicates model selection and parameterization, which must be performed against several metrics simultaneously. Here we evaluate Brownian motion, Lévy walk and several correlated random walks (CRWs) against the motility dynamics of neutrophils and lymph node T cells under inflammatory conditions by simultaneously considering cellular translational and turn speeds, and meandering indices. Heterogeneous cells exhibiting a continuum of inherent translational speeds and directionalities comprise both datasets, a feature significantly improving capture of in vivo motility when simulated as a CRW. Furthermore, translational and turn speeds are inversely correlated, and the corresponding CRW simulation again improves capture of our in vivo data, albeit to a lesser extent. In contrast, Brownian motion poorly reflects our data. Lévy walk is competitive in capturing some aspects of neutrophil motility, but T cell directional persistence only, therein highlighting the importance of evaluating models against several motility metrics simultaneously. This we achieve through novel application of multi-objective optimization, wherein each model is independently implemented and then parameterized to identify optimal trade-offs in performance against each metric. The resultant Pareto fronts of optimal solutions are directly contrasted to identify models best capturing in vivo dynamics, a technique that can aid model selection more generally. Our technique robustly determines our cell populations’ motility strategies, and paves the way for simulations that incorporate accurate immune cell motility dynamics. Public Library of Science 2016-09-02 /pmc/articles/PMC5010290/ /pubmed/27589606 http://dx.doi.org/10.1371/journal.pcbi.1005082 Text en © 2016 Read et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Read, Mark N. Bailey, Jacqueline Timmis, Jon Chtanova, Tatyana Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title | Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title_full | Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title_fullStr | Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title_full_unstemmed | Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title_short | Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection |
title_sort | leukocyte motility models assessed through simulation and multi-objective optimization-based model selection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010290/ https://www.ncbi.nlm.nih.gov/pubmed/27589606 http://dx.doi.org/10.1371/journal.pcbi.1005082 |
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