Cargando…

Evolution of the Exon-Intron Structure in Ciliate Genomes

A typical eukaryotic gene is comprised of alternating stretches of regions, exons and introns, retained in and spliced out a mature mRNA, respectively. Although the length of introns may vary substantially among organisms, a large fraction of genes contains short introns in many species. Notably, so...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bondarenko, Vladyslav S., Gelfand, Mikhail S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014332/ https://www.ncbi.nlm.nih.gov/pubmed/27603699 http://dx.doi.org/10.1371/journal.pone.0161476

Ejemplares similares

Evolution of Exon-Intron Structure and Alternative Splicing
por: Koralewski, Tomasz E., et al.
Publicado: (2011)

Macronuclear genome structure of the ciliate Nyctotherus ovalis: Single-gene chromosomes and tiny introns
por: Ricard, Guénola, et al.
Publicado: (2008)

Modeling the evolution dynamics of exon-intron structure with a general random fragmentation process
por: Wang, Liya, et al.
Publicado: (2013)

Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution
por: Gaydukova, Sofya A., et al.
Publicado: (2023)

Patterns of exon-intron architecture variation of genes in eukaryotic genomes
por: Zhu, Liucun, et al.
Publicado: (2009)

The evolution of protostome GATA factors: Molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships
por: Gillis, William Q, et al.
Publicado: (2008)

Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates
por: Gershgorin, Roman A., et al.
Publicado: (2017)

Exon definition as a potential negative force against intron losses in evolution
por: Niu, Deng-Ke
Publicado: (2008)

Characterizing exons and introns by regularity of nucleotide strings
por: Woods, Tonya, et al.
Publicado: (2016)

Intron exon boundary junctions in human genome have in-built unique structural and energetic signals
por: Mishra, Akhilesh, et al.
Publicado: (2021)

Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts
por: Buchmann, Jan P, et al.
Publicado: (2014)

Associations between intronic non-B DNA structures and exon skipping
por: Tsai, Zing Tsung-Yeh, et al.
Publicado: (2014)

Intron Retention and TE Exonization Events in ZRANB2
por: Park, Sang-Je, et al.
Publicado: (2012)

Intron Evolution and Information processing in the DNA polymerase α gene in spirotrichous ciliates: A hypothesis for interconversion between DNA and RNA deletion
por: Chang, Wei-Jen, et al.
Publicado: (2007)

IntEREst: intron-exon retention estimator
por: Oghabian, Ali, et al.
Publicado: (2018)

DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon–intron structure
por: Gelfman, Sahar, et al.
Publicado: (2013)

Insights into the Mechanism of Pre-mRNA Splicing of Tiny Introns from the Genome of a Giant Ciliate Stentor coeruleus
por: Nuadthaisong, Jirayu, et al.
Publicado: (2022)

Reciprocal intronic and exonic histone modification regions in humans
por: Huff, Jason T., et al.
Publicado: (2010)

mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
por: Lepennetier, Gildas, et al.
Publicado: (2016)

Exalign: a new method for comparative analysis of exon–intron gene structures
por: Pavesi, Giulio, et al.
Publicado: (2008)

The exon–intron gene structure upstream of the initiation codon predicts translation efficiency
por: Lim, Chun Shen, et al.
Publicado: (2018)

The exon context and distribution of Euascomycetes rRNA spliceosomal introns
por: Bhattacharya, Debashish, et al.
Publicado: (2003)

Parallel evolution of histophagy in ciliates of the genus Tetrahymena
por: Strüder-Kypke, Michaela C, et al.
Publicado: (2001)

Effects of Taxon Sampling in Reconstructions of Intron Evolution
por: Nikitin, Mikhail A., et al.
Publicado: (2013)

The Phosphofructokinase and Pyruvate Kinase Genes in Apis andreniformis and Apis cerana indica: Exon Intron Organisation and Evolution
por: Shullia, Nurul I., et al.
Publicado: (2019)

Spectral classification of short numerical exon and intron sequences
por: Kwan, Benjamin YM, et al.
Publicado: (2011)

A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss
por: Kavalecz, Napsugár, et al.
Publicado: (2019)

Exon-intron structure and sequence variation of the calreticulin gene among Rhipicephalus sanguineus group ticks
por: Porretta, Daniele, et al.
Publicado: (2016)

Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes
por: Warnecke, Tobias, et al.
Publicado: (2008)

NMR structure of the 5′ splice site in the group IIB intron Sc.ai5γ—conformational requirements for exon–intron recognition
por: Kruschel, Daniela, et al.
Publicado: (2014)

Intron Evolution: Testing Hypotheses of Intron Evolution Using the Phylogenomics of Tetraspanins
por: Garcia-España, Antonio, et al.
Publicado: (2009)

Structural disruption of exonic stem–loops immediately upstream of the intron regulates mammalian splicing
por: Saha, Kaushik, et al.
Publicado: (2020)

A unified mechanism for intron and exon definition and back-splicing
por: Li, Xueni, et al.
Publicado: (2019)

Spatial mapping of splicing factor complexes involved in exon and intron definition
por: Ellis, Jonathan D., et al.
Publicado: (2008)

Integrated entropy-based approach for analyzing exons and introns in DNA sequences
por: Li, Junyi, et al.
Publicado: (2019)

H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast
por: Shieh, Grace S, et al.
Publicado: (2011)

Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals
por: Chernikova, Diana, et al.
Publicado: (2016)

ExDom: an integrated database for comparative analysis of the exon–intron structures of protein domains in eukaryotes
por: Bhasi, Ashwini, et al.
Publicado: (2009)

Intron Evolution in Saccharomycetaceae
por: Hooks, Katarzyna B., et al.
Publicado: (2014)

Evolution of dispersal and life history strategies – Tetrahymena ciliates
por: Fjerdingstad, Else J, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_41allf3frb5ihmd375lvr1hcd0