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Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose
The goose is an economically important waterfowl that exhibits unique characteristics and abilities, such as liver fat deposition and fibre digestion. Here, we report de novo whole-genome assemblies for the goose and swan goose and describe the evolutionary relationships among 7 bird species, includ...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016989/ https://www.ncbi.nlm.nih.gov/pubmed/27608918 http://dx.doi.org/10.1038/srep32961 |
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author | Gao, Guangliang Zhao, Xianzhi Li, Qin He, Chuan Zhao, Wenjing Liu, Shuyun Ding, Jinmei Ye, Weixing Wang, Jun Chen, Ye Wang, Haiwei Li, Jing Luo, Yi Su, Jian Huang, Yong Liu, Zuohua Dai, Ronghua Shi, Yixiang Meng, He Wang, Qigui |
author_facet | Gao, Guangliang Zhao, Xianzhi Li, Qin He, Chuan Zhao, Wenjing Liu, Shuyun Ding, Jinmei Ye, Weixing Wang, Jun Chen, Ye Wang, Haiwei Li, Jing Luo, Yi Su, Jian Huang, Yong Liu, Zuohua Dai, Ronghua Shi, Yixiang Meng, He Wang, Qigui |
author_sort | Gao, Guangliang |
collection | PubMed |
description | The goose is an economically important waterfowl that exhibits unique characteristics and abilities, such as liver fat deposition and fibre digestion. Here, we report de novo whole-genome assemblies for the goose and swan goose and describe the evolutionary relationships among 7 bird species, including domestic and wild geese, which diverged approximately 3.4~6.3 million years ago (Mya). In contrast to chickens as a proximal species, the expanded and rapidly evolving genes found in the goose genome are mainly involved in metabolism, including energy, amino acid and carbohydrate metabolism. Further integrated analysis of the host genome and gut metagenome indicated that the most widely shared functional enrichment of genes occurs for functions such as glycolysis/gluconeogenesis, starch and sucrose metabolism, propanoate metabolism and the citrate cycle. We speculate that the unique physiological abilities of geese benefit from the adaptive evolution of the host genome and symbiotic interactions with gut microbes. |
format | Online Article Text |
id | pubmed-5016989 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50169892016-09-12 Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose Gao, Guangliang Zhao, Xianzhi Li, Qin He, Chuan Zhao, Wenjing Liu, Shuyun Ding, Jinmei Ye, Weixing Wang, Jun Chen, Ye Wang, Haiwei Li, Jing Luo, Yi Su, Jian Huang, Yong Liu, Zuohua Dai, Ronghua Shi, Yixiang Meng, He Wang, Qigui Sci Rep Article The goose is an economically important waterfowl that exhibits unique characteristics and abilities, such as liver fat deposition and fibre digestion. Here, we report de novo whole-genome assemblies for the goose and swan goose and describe the evolutionary relationships among 7 bird species, including domestic and wild geese, which diverged approximately 3.4~6.3 million years ago (Mya). In contrast to chickens as a proximal species, the expanded and rapidly evolving genes found in the goose genome are mainly involved in metabolism, including energy, amino acid and carbohydrate metabolism. Further integrated analysis of the host genome and gut metagenome indicated that the most widely shared functional enrichment of genes occurs for functions such as glycolysis/gluconeogenesis, starch and sucrose metabolism, propanoate metabolism and the citrate cycle. We speculate that the unique physiological abilities of geese benefit from the adaptive evolution of the host genome and symbiotic interactions with gut microbes. Nature Publishing Group 2016-09-09 /pmc/articles/PMC5016989/ /pubmed/27608918 http://dx.doi.org/10.1038/srep32961 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Gao, Guangliang Zhao, Xianzhi Li, Qin He, Chuan Zhao, Wenjing Liu, Shuyun Ding, Jinmei Ye, Weixing Wang, Jun Chen, Ye Wang, Haiwei Li, Jing Luo, Yi Su, Jian Huang, Yong Liu, Zuohua Dai, Ronghua Shi, Yixiang Meng, He Wang, Qigui Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title | Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title_full | Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title_fullStr | Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title_full_unstemmed | Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title_short | Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
title_sort | genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016989/ https://www.ncbi.nlm.nih.gov/pubmed/27608918 http://dx.doi.org/10.1038/srep32961 |
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