An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)

Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1(T) is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium...

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Autores principales: Nicholson, Wayne L., Davis, Christina L., Shapiro, Nicole, Huntemann, Marcel, Clum, Alicia, Reddy, T. B. K., Pillay, Manoj, Markowitz, Victor, Varghese, Neha, Pati, Amrita, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016993/
https://www.ncbi.nlm.nih.gov/pubmed/27617056
http://dx.doi.org/10.1186/s40793-016-0193-3
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author Nicholson, Wayne L.
Davis, Christina L.
Shapiro, Nicole
Huntemann, Marcel
Clum, Alicia
Reddy, T. B. K.
Pillay, Manoj
Markowitz, Victor
Varghese, Neha
Pati, Amrita
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
author_facet Nicholson, Wayne L.
Davis, Christina L.
Shapiro, Nicole
Huntemann, Marcel
Clum, Alicia
Reddy, T. B. K.
Pillay, Manoj
Markowitz, Victor
Varghese, Neha
Pati, Amrita
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
author_sort Nicholson, Wayne L.
collection PubMed
description Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1(T) is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1(T). The genome comprised 2,748,608 bp with a G + C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272; and 65,904 bp.
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spelling pubmed-50169932016-09-10 An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T) Nicholson, Wayne L. Davis, Christina L. Shapiro, Nicole Huntemann, Marcel Clum, Alicia Reddy, T. B. K. Pillay, Manoj Markowitz, Victor Varghese, Neha Pati, Amrita Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Stand Genomic Sci Short Genome Report Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1(T) is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1(T). The genome comprised 2,748,608 bp with a G + C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272; and 65,904 bp. BioMed Central 2016-09-08 /pmc/articles/PMC5016993/ /pubmed/27617056 http://dx.doi.org/10.1186/s40793-016-0193-3 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Nicholson, Wayne L.
Davis, Christina L.
Shapiro, Nicole
Huntemann, Marcel
Clum, Alicia
Reddy, T. B. K.
Pillay, Manoj
Markowitz, Victor
Varghese, Neha
Pati, Amrita
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title_full An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title_fullStr An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title_full_unstemmed An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title_short An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T)
title_sort improved high-quality draft genome sequence of carnobacterium inhibens subsp. inhibens strain k1(t)
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016993/
https://www.ncbi.nlm.nih.gov/pubmed/27617056
http://dx.doi.org/10.1186/s40793-016-0193-3
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