Cargando…
PGD: a pangolin genome hub for the research community
Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences wil...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018392/ https://www.ncbi.nlm.nih.gov/pubmed/27616775 http://dx.doi.org/10.1093/database/baw063 |
_version_ | 1782452909745635328 |
---|---|
author | Tan, Tze King Tan, Ka Yun Hari, Ranjeev Mohamed Yusoff, Aini Wong, Guat Jah Siow, Cheuk Chuen Mutha, Naresh V.R. Rayko, Mike Komissarov, Aleksey Dobrynin, Pavel Krasheninnikova, Ksenia Tamazian, Gaik Paterson, Ian C. Warren, Wesley C. Johnson, Warren E. O'Brien, Stephen J. Choo, Siew Woh |
author_facet | Tan, Tze King Tan, Ka Yun Hari, Ranjeev Mohamed Yusoff, Aini Wong, Guat Jah Siow, Cheuk Chuen Mutha, Naresh V.R. Rayko, Mike Komissarov, Aleksey Dobrynin, Pavel Krasheninnikova, Ksenia Tamazian, Gaik Paterson, Ian C. Warren, Wesley C. Johnson, Warren E. O'Brien, Stephen J. Choo, Siew Woh |
author_sort | Tan, Tze King |
collection | PubMed |
description | Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences will serve as reference sequences for future research to address issues of species conservation and to advance knowledge in mammalian biology and evolution. To further facilitate the global research effort in pangolin biology, we developed the Pangolin Genome Database (PGD), as a future hub for hosting pangolin genomic and transcriptomic data and annotations, and with useful analysis tools for the research community. Currently, the PGD provides the reference pangolin genome and transcriptome data, gene sequences and functional information, expressed transcripts, pseudogenes, genomic variations, organ-specific expression data and other useful annotations. We anticipate that the PGD will be an invaluable platform for researchers who are interested in pangolin and mammalian research. We will continue updating this hub by including more data, annotation and analysis tools particularly from our research consortium. Database URL: http://pangolin-genome.um.edu.my |
format | Online Article Text |
id | pubmed-5018392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-50183922016-09-12 PGD: a pangolin genome hub for the research community Tan, Tze King Tan, Ka Yun Hari, Ranjeev Mohamed Yusoff, Aini Wong, Guat Jah Siow, Cheuk Chuen Mutha, Naresh V.R. Rayko, Mike Komissarov, Aleksey Dobrynin, Pavel Krasheninnikova, Ksenia Tamazian, Gaik Paterson, Ian C. Warren, Wesley C. Johnson, Warren E. O'Brien, Stephen J. Choo, Siew Woh Database (Oxford) Original Article Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences will serve as reference sequences for future research to address issues of species conservation and to advance knowledge in mammalian biology and evolution. To further facilitate the global research effort in pangolin biology, we developed the Pangolin Genome Database (PGD), as a future hub for hosting pangolin genomic and transcriptomic data and annotations, and with useful analysis tools for the research community. Currently, the PGD provides the reference pangolin genome and transcriptome data, gene sequences and functional information, expressed transcripts, pseudogenes, genomic variations, organ-specific expression data and other useful annotations. We anticipate that the PGD will be an invaluable platform for researchers who are interested in pangolin and mammalian research. We will continue updating this hub by including more data, annotation and analysis tools particularly from our research consortium. Database URL: http://pangolin-genome.um.edu.my Oxford University Press 2016-09-11 /pmc/articles/PMC5018392/ /pubmed/27616775 http://dx.doi.org/10.1093/database/baw063 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Tan, Tze King Tan, Ka Yun Hari, Ranjeev Mohamed Yusoff, Aini Wong, Guat Jah Siow, Cheuk Chuen Mutha, Naresh V.R. Rayko, Mike Komissarov, Aleksey Dobrynin, Pavel Krasheninnikova, Ksenia Tamazian, Gaik Paterson, Ian C. Warren, Wesley C. Johnson, Warren E. O'Brien, Stephen J. Choo, Siew Woh PGD: a pangolin genome hub for the research community |
title | PGD: a pangolin genome hub for the research community |
title_full | PGD: a pangolin genome hub for the research community |
title_fullStr | PGD: a pangolin genome hub for the research community |
title_full_unstemmed | PGD: a pangolin genome hub for the research community |
title_short | PGD: a pangolin genome hub for the research community |
title_sort | pgd: a pangolin genome hub for the research community |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018392/ https://www.ncbi.nlm.nih.gov/pubmed/27616775 http://dx.doi.org/10.1093/database/baw063 |
work_keys_str_mv | AT tantzeking pgdapangolingenomehubfortheresearchcommunity AT tankayun pgdapangolingenomehubfortheresearchcommunity AT hariranjeev pgdapangolingenomehubfortheresearchcommunity AT mohamedyusoffaini pgdapangolingenomehubfortheresearchcommunity AT wongguatjah pgdapangolingenomehubfortheresearchcommunity AT siowcheukchuen pgdapangolingenomehubfortheresearchcommunity AT muthanareshvr pgdapangolingenomehubfortheresearchcommunity AT raykomike pgdapangolingenomehubfortheresearchcommunity AT komissarovaleksey pgdapangolingenomehubfortheresearchcommunity AT dobryninpavel pgdapangolingenomehubfortheresearchcommunity AT krasheninnikovaksenia pgdapangolingenomehubfortheresearchcommunity AT tamaziangaik pgdapangolingenomehubfortheresearchcommunity AT patersonianc pgdapangolingenomehubfortheresearchcommunity AT warrenwesleyc pgdapangolingenomehubfortheresearchcommunity AT johnsonwarrene pgdapangolingenomehubfortheresearchcommunity AT obrienstephenj pgdapangolingenomehubfortheresearchcommunity AT choosiewwoh pgdapangolingenomehubfortheresearchcommunity |