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PGD: a pangolin genome hub for the research community

Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences wil...

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Autores principales: Tan, Tze King, Tan, Ka Yun, Hari, Ranjeev, Mohamed Yusoff, Aini, Wong, Guat Jah, Siow, Cheuk Chuen, Mutha, Naresh V.R., Rayko, Mike, Komissarov, Aleksey, Dobrynin, Pavel, Krasheninnikova, Ksenia, Tamazian, Gaik, Paterson, Ian C., Warren, Wesley C., Johnson, Warren E., O'Brien, Stephen J., Choo, Siew Woh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018392/
https://www.ncbi.nlm.nih.gov/pubmed/27616775
http://dx.doi.org/10.1093/database/baw063
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author Tan, Tze King
Tan, Ka Yun
Hari, Ranjeev
Mohamed Yusoff, Aini
Wong, Guat Jah
Siow, Cheuk Chuen
Mutha, Naresh V.R.
Rayko, Mike
Komissarov, Aleksey
Dobrynin, Pavel
Krasheninnikova, Ksenia
Tamazian, Gaik
Paterson, Ian C.
Warren, Wesley C.
Johnson, Warren E.
O'Brien, Stephen J.
Choo, Siew Woh
author_facet Tan, Tze King
Tan, Ka Yun
Hari, Ranjeev
Mohamed Yusoff, Aini
Wong, Guat Jah
Siow, Cheuk Chuen
Mutha, Naresh V.R.
Rayko, Mike
Komissarov, Aleksey
Dobrynin, Pavel
Krasheninnikova, Ksenia
Tamazian, Gaik
Paterson, Ian C.
Warren, Wesley C.
Johnson, Warren E.
O'Brien, Stephen J.
Choo, Siew Woh
author_sort Tan, Tze King
collection PubMed
description Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences will serve as reference sequences for future research to address issues of species conservation and to advance knowledge in mammalian biology and evolution. To further facilitate the global research effort in pangolin biology, we developed the Pangolin Genome Database (PGD), as a future hub for hosting pangolin genomic and transcriptomic data and annotations, and with useful analysis tools for the research community. Currently, the PGD provides the reference pangolin genome and transcriptome data, gene sequences and functional information, expressed transcripts, pseudogenes, genomic variations, organ-specific expression data and other useful annotations. We anticipate that the PGD will be an invaluable platform for researchers who are interested in pangolin and mammalian research. We will continue updating this hub by including more data, annotation and analysis tools particularly from our research consortium. Database URL: http://pangolin-genome.um.edu.my
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spelling pubmed-50183922016-09-12 PGD: a pangolin genome hub for the research community Tan, Tze King Tan, Ka Yun Hari, Ranjeev Mohamed Yusoff, Aini Wong, Guat Jah Siow, Cheuk Chuen Mutha, Naresh V.R. Rayko, Mike Komissarov, Aleksey Dobrynin, Pavel Krasheninnikova, Ksenia Tamazian, Gaik Paterson, Ian C. Warren, Wesley C. Johnson, Warren E. O'Brien, Stephen J. Choo, Siew Woh Database (Oxford) Original Article Pangolins (order Pholidota) are the only mammals covered by scales. We have recently sequenced and analyzed the genomes of two critically endangered Asian pangolin species, namely the Malayan pangolin (Manis javanica) and the Chinese pangolin (Manis pentadactyla). These complete genome sequences will serve as reference sequences for future research to address issues of species conservation and to advance knowledge in mammalian biology and evolution. To further facilitate the global research effort in pangolin biology, we developed the Pangolin Genome Database (PGD), as a future hub for hosting pangolin genomic and transcriptomic data and annotations, and with useful analysis tools for the research community. Currently, the PGD provides the reference pangolin genome and transcriptome data, gene sequences and functional information, expressed transcripts, pseudogenes, genomic variations, organ-specific expression data and other useful annotations. We anticipate that the PGD will be an invaluable platform for researchers who are interested in pangolin and mammalian research. We will continue updating this hub by including more data, annotation and analysis tools particularly from our research consortium. Database URL: http://pangolin-genome.um.edu.my Oxford University Press 2016-09-11 /pmc/articles/PMC5018392/ /pubmed/27616775 http://dx.doi.org/10.1093/database/baw063 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Tan, Tze King
Tan, Ka Yun
Hari, Ranjeev
Mohamed Yusoff, Aini
Wong, Guat Jah
Siow, Cheuk Chuen
Mutha, Naresh V.R.
Rayko, Mike
Komissarov, Aleksey
Dobrynin, Pavel
Krasheninnikova, Ksenia
Tamazian, Gaik
Paterson, Ian C.
Warren, Wesley C.
Johnson, Warren E.
O'Brien, Stephen J.
Choo, Siew Woh
PGD: a pangolin genome hub for the research community
title PGD: a pangolin genome hub for the research community
title_full PGD: a pangolin genome hub for the research community
title_fullStr PGD: a pangolin genome hub for the research community
title_full_unstemmed PGD: a pangolin genome hub for the research community
title_short PGD: a pangolin genome hub for the research community
title_sort pgd: a pangolin genome hub for the research community
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018392/
https://www.ncbi.nlm.nih.gov/pubmed/27616775
http://dx.doi.org/10.1093/database/baw063
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