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STAR: a simple TAL effector assembly reaction using isothermal assembly

Transcription activator-like effectors (TALEs) contain modular programmable DNA binding domains. Fusing TALEs with effector domains creates synthetic transcription factors (TALE-TFs) or nucleases (TALENs), enabling precise gene manipulations. The construction of TALEs remains challenging due to thei...

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Autores principales: Gogolok, Sabine, Garcia-Diaz, Claudia, Pollard, Steven M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018962/
https://www.ncbi.nlm.nih.gov/pubmed/27615025
http://dx.doi.org/10.1038/srep33209
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author Gogolok, Sabine
Garcia-Diaz, Claudia
Pollard, Steven M.
author_facet Gogolok, Sabine
Garcia-Diaz, Claudia
Pollard, Steven M.
author_sort Gogolok, Sabine
collection PubMed
description Transcription activator-like effectors (TALEs) contain modular programmable DNA binding domains. Fusing TALEs with effector domains creates synthetic transcription factors (TALE-TFs) or nucleases (TALENs), enabling precise gene manipulations. The construction of TALEs remains challenging due to their repetitive sequences. Here we report a simple TALE assembly reaction (STAR) that enables individual laboratories to generate multiple TALEs in a facile manner. STAR uses an isothermal assembly (‘Gibson assembly’) that is labour- and cost-effective, accessible, rapid and scalable. A small 68-part fragment library is employed, and the specific TALE repeat sequence is generated within ~8 hours. Sequence-verified TALENs or TALE-TF plasmids targeting 17 bp target sequences can be produced within three days, without the need for stepwise intermediate plasmid production. We demonstrate the utility of STAR through production of functional TALE-TFs capable of activating human SOX2 expression. STAR addresses some of the shortcomings of existing Golden Gate or solid-phase assembly protocols and enables routine production of TALE-TFs that will complement emerging CRISPR/Cas9-based reagents across diverse applications in mammalian stem cell and synthetic biology.
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spelling pubmed-50189622016-09-19 STAR: a simple TAL effector assembly reaction using isothermal assembly Gogolok, Sabine Garcia-Diaz, Claudia Pollard, Steven M. Sci Rep Article Transcription activator-like effectors (TALEs) contain modular programmable DNA binding domains. Fusing TALEs with effector domains creates synthetic transcription factors (TALE-TFs) or nucleases (TALENs), enabling precise gene manipulations. The construction of TALEs remains challenging due to their repetitive sequences. Here we report a simple TALE assembly reaction (STAR) that enables individual laboratories to generate multiple TALEs in a facile manner. STAR uses an isothermal assembly (‘Gibson assembly’) that is labour- and cost-effective, accessible, rapid and scalable. A small 68-part fragment library is employed, and the specific TALE repeat sequence is generated within ~8 hours. Sequence-verified TALENs or TALE-TF plasmids targeting 17 bp target sequences can be produced within three days, without the need for stepwise intermediate plasmid production. We demonstrate the utility of STAR through production of functional TALE-TFs capable of activating human SOX2 expression. STAR addresses some of the shortcomings of existing Golden Gate or solid-phase assembly protocols and enables routine production of TALE-TFs that will complement emerging CRISPR/Cas9-based reagents across diverse applications in mammalian stem cell and synthetic biology. Nature Publishing Group 2016-09-12 /pmc/articles/PMC5018962/ /pubmed/27615025 http://dx.doi.org/10.1038/srep33209 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Gogolok, Sabine
Garcia-Diaz, Claudia
Pollard, Steven M.
STAR: a simple TAL effector assembly reaction using isothermal assembly
title STAR: a simple TAL effector assembly reaction using isothermal assembly
title_full STAR: a simple TAL effector assembly reaction using isothermal assembly
title_fullStr STAR: a simple TAL effector assembly reaction using isothermal assembly
title_full_unstemmed STAR: a simple TAL effector assembly reaction using isothermal assembly
title_short STAR: a simple TAL effector assembly reaction using isothermal assembly
title_sort star: a simple tal effector assembly reaction using isothermal assembly
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018962/
https://www.ncbi.nlm.nih.gov/pubmed/27615025
http://dx.doi.org/10.1038/srep33209
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