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The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community

The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise intera...

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Detalles Bibliográficos
Autores principales: Guo, Xiaokan, Boedicker, James Q.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021341/
https://www.ncbi.nlm.nih.gov/pubmed/27623159
http://dx.doi.org/10.1371/journal.pcbi.1005079
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author Guo, Xiaokan
Boedicker, James Q.
author_facet Guo, Xiaokan
Boedicker, James Q.
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description The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise interactions between species. Here we examine the ability of a modified general Lotka-Volterra model with cell-cell interaction coefficients to predict the overall metabolic rate of a well-mixed microbial community comprised of four heterotrophic natural isolates, experimentally quantifying the strengths of two, three, and four-species interactions. Within this community, interactions between any pair of microbial species were positive, while higher-order interactions, between 3 or more microbial species, slightly modulated community metabolism. For this simple community, the metabolic rate of can be well predicted only with taking into account pairwise interactions. Simulations using the experimentally determined interaction parameters revealed that spatial heterogeneity in the distribution of cells increased the importance of multispecies interactions in dictating function at both the local and global scales.
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spelling pubmed-50213412016-09-27 The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community Guo, Xiaokan Boedicker, James Q. PLoS Comput Biol Research Article The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise interactions between species. Here we examine the ability of a modified general Lotka-Volterra model with cell-cell interaction coefficients to predict the overall metabolic rate of a well-mixed microbial community comprised of four heterotrophic natural isolates, experimentally quantifying the strengths of two, three, and four-species interactions. Within this community, interactions between any pair of microbial species were positive, while higher-order interactions, between 3 or more microbial species, slightly modulated community metabolism. For this simple community, the metabolic rate of can be well predicted only with taking into account pairwise interactions. Simulations using the experimentally determined interaction parameters revealed that spatial heterogeneity in the distribution of cells increased the importance of multispecies interactions in dictating function at both the local and global scales. Public Library of Science 2016-09-13 /pmc/articles/PMC5021341/ /pubmed/27623159 http://dx.doi.org/10.1371/journal.pcbi.1005079 Text en © 2016 Guo, Boedicker http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Guo, Xiaokan
Boedicker, James Q.
The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title_full The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title_fullStr The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title_full_unstemmed The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title_short The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
title_sort contribution of high-order metabolic interactions to the global activity of a four-species microbial community
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021341/
https://www.ncbi.nlm.nih.gov/pubmed/27623159
http://dx.doi.org/10.1371/journal.pcbi.1005079
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