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The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise intera...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021341/ https://www.ncbi.nlm.nih.gov/pubmed/27623159 http://dx.doi.org/10.1371/journal.pcbi.1005079 |
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author | Guo, Xiaokan Boedicker, James Q. |
author_facet | Guo, Xiaokan Boedicker, James Q. |
author_sort | Guo, Xiaokan |
collection | PubMed |
description | The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise interactions between species. Here we examine the ability of a modified general Lotka-Volterra model with cell-cell interaction coefficients to predict the overall metabolic rate of a well-mixed microbial community comprised of four heterotrophic natural isolates, experimentally quantifying the strengths of two, three, and four-species interactions. Within this community, interactions between any pair of microbial species were positive, while higher-order interactions, between 3 or more microbial species, slightly modulated community metabolism. For this simple community, the metabolic rate of can be well predicted only with taking into account pairwise interactions. Simulations using the experimentally determined interaction parameters revealed that spatial heterogeneity in the distribution of cells increased the importance of multispecies interactions in dictating function at both the local and global scales. |
format | Online Article Text |
id | pubmed-5021341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-50213412016-09-27 The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community Guo, Xiaokan Boedicker, James Q. PLoS Comput Biol Research Article The activity of a biological community is the outcome of complex processes involving interactions between community members. It is often unclear how to accurately incorporate these interactions into predictive models. Previous work has shown a range of positive and negative metabolic pairwise interactions between species. Here we examine the ability of a modified general Lotka-Volterra model with cell-cell interaction coefficients to predict the overall metabolic rate of a well-mixed microbial community comprised of four heterotrophic natural isolates, experimentally quantifying the strengths of two, three, and four-species interactions. Within this community, interactions between any pair of microbial species were positive, while higher-order interactions, between 3 or more microbial species, slightly modulated community metabolism. For this simple community, the metabolic rate of can be well predicted only with taking into account pairwise interactions. Simulations using the experimentally determined interaction parameters revealed that spatial heterogeneity in the distribution of cells increased the importance of multispecies interactions in dictating function at both the local and global scales. Public Library of Science 2016-09-13 /pmc/articles/PMC5021341/ /pubmed/27623159 http://dx.doi.org/10.1371/journal.pcbi.1005079 Text en © 2016 Guo, Boedicker http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Guo, Xiaokan Boedicker, James Q. The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title | The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title_full | The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title_fullStr | The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title_full_unstemmed | The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title_short | The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community |
title_sort | contribution of high-order metabolic interactions to the global activity of a four-species microbial community |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021341/ https://www.ncbi.nlm.nih.gov/pubmed/27623159 http://dx.doi.org/10.1371/journal.pcbi.1005079 |
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