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In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis
Giardia duodenalis is a worldwide protozoa known causing diarrhea in all vertebrates, humans among these. Homologous recombination is a mechanism that provides genomic stability. Two putative recombinases were identified in G. duodenalis genome: GdDMC1A and GdDMC1B. In this article, we describe the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021851/ https://www.ncbi.nlm.nih.gov/pubmed/27660811 http://dx.doi.org/10.1016/j.dib.2016.08.031 |
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author | Torres-Huerta, Ana Laura Martínez-Miguel, Rosa María Bazán-Tejeda, María Luisa Bermúdez-Cruz, Rosa María |
author_facet | Torres-Huerta, Ana Laura Martínez-Miguel, Rosa María Bazán-Tejeda, María Luisa Bermúdez-Cruz, Rosa María |
author_sort | Torres-Huerta, Ana Laura |
collection | PubMed |
description | Giardia duodenalis is a worldwide protozoa known causing diarrhea in all vertebrates, humans among these. Homologous recombination is a mechanism that provides genomic stability. Two putative recombinases were identified in G. duodenalis genome: GdDMC1A and GdDMC1B. In this article, we describe the identification of conserved domains in GdDMC1A and GdDMC1B, such as: DNA binding domains (Helix-turn-helix motif, loops 1 and 2) and an ATPcap and Walker A and B motifs associated with ATP binding and hydrolysis, phylogenetic analyses among assemblages and three-dimensional structure modeling of these recombinases using bioinformatics tools. Also, experimental data is described about LD50 determination for ionizing radiation in trophozoites of G. duodenalis. Additionally, as recombinases, GdDMC1A and GdDMC1B were used to rescue a defective Saccharomyces cerevisiae Δ rad51 strain under genotoxic conditions and data is described. The data described here are related to the research article entitled “Characterization of recombinase DMC1B and its functional role as Rad51 in DNA damage repair in Giardia duodenalis trophozoites” (Torres-Huerta et al.,) [1]. |
format | Online Article Text |
id | pubmed-5021851 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50218512016-09-22 In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis Torres-Huerta, Ana Laura Martínez-Miguel, Rosa María Bazán-Tejeda, María Luisa Bermúdez-Cruz, Rosa María Data Brief Data Article Giardia duodenalis is a worldwide protozoa known causing diarrhea in all vertebrates, humans among these. Homologous recombination is a mechanism that provides genomic stability. Two putative recombinases were identified in G. duodenalis genome: GdDMC1A and GdDMC1B. In this article, we describe the identification of conserved domains in GdDMC1A and GdDMC1B, such as: DNA binding domains (Helix-turn-helix motif, loops 1 and 2) and an ATPcap and Walker A and B motifs associated with ATP binding and hydrolysis, phylogenetic analyses among assemblages and three-dimensional structure modeling of these recombinases using bioinformatics tools. Also, experimental data is described about LD50 determination for ionizing radiation in trophozoites of G. duodenalis. Additionally, as recombinases, GdDMC1A and GdDMC1B were used to rescue a defective Saccharomyces cerevisiae Δ rad51 strain under genotoxic conditions and data is described. The data described here are related to the research article entitled “Characterization of recombinase DMC1B and its functional role as Rad51 in DNA damage repair in Giardia duodenalis trophozoites” (Torres-Huerta et al.,) [1]. Elsevier 2016-08-22 /pmc/articles/PMC5021851/ /pubmed/27660811 http://dx.doi.org/10.1016/j.dib.2016.08.031 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Torres-Huerta, Ana Laura Martínez-Miguel, Rosa María Bazán-Tejeda, María Luisa Bermúdez-Cruz, Rosa María In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title | In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title_full | In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title_fullStr | In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title_full_unstemmed | In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title_short | In silico data analyses of recombinases GdDMC1A and GdDMC1B from Giardia duodenalis |
title_sort | in silico data analyses of recombinases gddmc1a and gddmc1b from giardia duodenalis |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021851/ https://www.ncbi.nlm.nih.gov/pubmed/27660811 http://dx.doi.org/10.1016/j.dib.2016.08.031 |
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