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De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit
Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries throug...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024146/ https://www.ncbi.nlm.nih.gov/pubmed/27668185 http://dx.doi.org/10.1016/j.gdata.2016.09.003 |
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author | Matra, Deden Derajat Kozaki, Toshinori Ishii, Kazuo Poerwanto, Roedhy Inoue, Eiichi |
author_facet | Matra, Deden Derajat Kozaki, Toshinori Ishii, Kazuo Poerwanto, Roedhy Inoue, Eiichi |
author_sort | Matra, Deden Derajat |
collection | PubMed |
description | Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw data obtained in this study can be accessible in DDBJ database with accession number of DRA005014 with bioproject accession number of PRJDB5091. We obtained 268,851 transcripts as well as 155,850 unigenes, having N50 value of 555 and 433 bp, respectively. Transcript/unigene length ranged from 201 to 5916 bp. The unigenes were annotated with two main databases from NCBI and UniProtKB, respectively having annotated-sequences of 73,287 and 73,107, respectively. These transcriptomic data will be beneficial for studying transcriptome of Garcinia mangostana L. |
format | Online Article Text |
id | pubmed-5024146 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50241462016-09-23 De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit Matra, Deden Derajat Kozaki, Toshinori Ishii, Kazuo Poerwanto, Roedhy Inoue, Eiichi Genom Data Data in Brief Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw data obtained in this study can be accessible in DDBJ database with accession number of DRA005014 with bioproject accession number of PRJDB5091. We obtained 268,851 transcripts as well as 155,850 unigenes, having N50 value of 555 and 433 bp, respectively. Transcript/unigene length ranged from 201 to 5916 bp. The unigenes were annotated with two main databases from NCBI and UniProtKB, respectively having annotated-sequences of 73,287 and 73,107, respectively. These transcriptomic data will be beneficial for studying transcriptome of Garcinia mangostana L. Elsevier 2016-09-09 /pmc/articles/PMC5024146/ /pubmed/27668185 http://dx.doi.org/10.1016/j.gdata.2016.09.003 Text en © 2016 Stellenbosch University http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Matra, Deden Derajat Kozaki, Toshinori Ishii, Kazuo Poerwanto, Roedhy Inoue, Eiichi De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title | De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title_full | De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title_fullStr | De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title_full_unstemmed | De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title_short | De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit |
title_sort | de novo transcriptome assembly of mangosteen (garcinia mangostana l.) fruit |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024146/ https://www.ncbi.nlm.nih.gov/pubmed/27668185 http://dx.doi.org/10.1016/j.gdata.2016.09.003 |
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