Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia

The draft genome sequence of Halorubrum sp. SAH-A6, isolated from commercial rock salts of the Danakil depression, Ethiopia. The genome comprised 3,325,770 bp, with the G + C content of 68.0%. The strain has many genes which are responsible for secondary metabolites biosynthesis, transport and catab...

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Autores principales: Gibtan, Ashagrie, Woo, Mingyeong, Oh, Dokyung, Park, Kyounghee, Lee, Han-Seung, Sohn, Jae Hak, Lee, Dong-Woo, Shin, Jung-Kue, Lee, Sang-Jae
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Lab Resource
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024332/
https://www.ncbi.nlm.nih.gov/pubmed/27668183
http://dx.doi.org/10.1016/j.gdata.2016.08.014
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author Gibtan, Ashagrie
Woo, Mingyeong
Oh, Dokyung
Park, Kyounghee
Lee, Han-Seung
Sohn, Jae Hak
Lee, Dong-Woo
Shin, Jung-Kue
Lee, Sang-Jae
author_facet Gibtan, Ashagrie
Woo, Mingyeong
Oh, Dokyung
Park, Kyounghee
Lee, Han-Seung
Sohn, Jae Hak
Lee, Dong-Woo
Shin, Jung-Kue
Lee, Sang-Jae
author_sort Gibtan, Ashagrie
collection PubMed
description The draft genome sequence of Halorubrum sp. SAH-A6, isolated from commercial rock salts of the Danakil depression, Ethiopia. The genome comprised 3,325,770 bp, with the G + C content of 68.0%. The strain has many genes which are responsible for secondary metabolites biosynthesis, transport and catabolism as compared to other Halorubrum archaea members. Abundant genes responsible for numerous transport systems, solute accumulation, and aromatic/sulfur decomposition were detected. The first genomic analysis encourages further research on comparative genomics, and biotechnological applications. The NCBI accession number for this genome is SAMN04278861 and ID: 4278861 and strain deposited with accession number KCTC 43215.
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spelling pubmed-50243322016-09-23 Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia Gibtan, Ashagrie Woo, Mingyeong Oh, Dokyung Park, Kyounghee Lee, Han-Seung Sohn, Jae Hak Lee, Dong-Woo Shin, Jung-Kue Lee, Sang-Jae Genom Data Lab Resource The draft genome sequence of Halorubrum sp. SAH-A6, isolated from commercial rock salts of the Danakil depression, Ethiopia. The genome comprised 3,325,770 bp, with the G + C content of 68.0%. The strain has many genes which are responsible for secondary metabolites biosynthesis, transport and catabolism as compared to other Halorubrum archaea members. Abundant genes responsible for numerous transport systems, solute accumulation, and aromatic/sulfur decomposition were detected. The first genomic analysis encourages further research on comparative genomics, and biotechnological applications. The NCBI accession number for this genome is SAMN04278861 and ID: 4278861 and strain deposited with accession number KCTC 43215. Elsevier 2016-08-30 /pmc/articles/PMC5024332/ /pubmed/27668183 http://dx.doi.org/10.1016/j.gdata.2016.08.014 Text en © 2016 Stellenbosch University http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Lab Resource
Gibtan, Ashagrie
Woo, Mingyeong
Oh, Dokyung
Park, Kyounghee
Lee, Han-Seung
Sohn, Jae Hak
Lee, Dong-Woo
Shin, Jung-Kue
Lee, Sang-Jae
Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title_full Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title_fullStr Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title_full_unstemmed Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title_short Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia
title_sort draft genome sequence of the extremely halophilic halorubrum sp. sah-a6 isolated from rock salts of the danakil depression, ethiopia
topic Lab Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024332/
https://www.ncbi.nlm.nih.gov/pubmed/27668183
http://dx.doi.org/10.1016/j.gdata.2016.08.014
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