Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient

Butyricimonas phoceensis strain AT9 (= CSUR 2478 = DSM 100838) was isolated from a stool sample from a morbidly obese French patient living in Marseille using the culturomics approach. The genome of this Gram-negative-staining, anaerobic and non–spore forming rod bacillus is 4 736 949 bp long and co...

Descripción completa

Detalles Bibliográficos
Autores principales: Togo, A.H., Diop, A., Dubourg, G., Nguyen, T.T., Andrieu, C., Caputo, A., Couderc, C., Fournier, P.-E., Maraninchi, M., Valero, R., Raoult, D., Million, M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Taxonogenomics: Genome of a New Organism
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024336/
https://www.ncbi.nlm.nih.gov/pubmed/27668083
http://dx.doi.org/10.1016/j.nmni.2016.07.010
_version_ 1782453791090540544
author Togo, A.H.
Diop, A.
Dubourg, G.
Nguyen, T.T.
Andrieu, C.
Caputo, A.
Couderc, C.
Fournier, P.-E.
Maraninchi, M.
Valero, R.
Raoult, D.
Million, M.
author_facet Togo, A.H.
Diop, A.
Dubourg, G.
Nguyen, T.T.
Andrieu, C.
Caputo, A.
Couderc, C.
Fournier, P.-E.
Maraninchi, M.
Valero, R.
Raoult, D.
Million, M.
author_sort Togo, A.H.
collection PubMed
description Butyricimonas phoceensis strain AT9 (= CSUR 2478 = DSM 100838) was isolated from a stool sample from a morbidly obese French patient living in Marseille using the culturomics approach. The genome of this Gram-negative-staining, anaerobic and non–spore forming rod bacillus is 4 736 949 bp long and contains 3947 protein-coding genes. Genomic analysis identified 173 genes as ORFans (4.5%) and 1650 orthologous proteins (42%) not shared with the closest phylogenetic species, Butyricimonas virosa. Its major fatty acid was the branched acid iso-C15:0 (62.3%).
format Online
Article
Text
id pubmed-5024336
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-50243362016-09-23 Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient Togo, A.H. Diop, A. Dubourg, G. Nguyen, T.T. Andrieu, C. Caputo, A. Couderc, C. Fournier, P.-E. Maraninchi, M. Valero, R. Raoult, D. Million, M. New Microbes New Infect Taxonogenomics: Genome of a New Organism Butyricimonas phoceensis strain AT9 (= CSUR 2478 = DSM 100838) was isolated from a stool sample from a morbidly obese French patient living in Marseille using the culturomics approach. The genome of this Gram-negative-staining, anaerobic and non–spore forming rod bacillus is 4 736 949 bp long and contains 3947 protein-coding genes. Genomic analysis identified 173 genes as ORFans (4.5%) and 1650 orthologous proteins (42%) not shared with the closest phylogenetic species, Butyricimonas virosa. Its major fatty acid was the branched acid iso-C15:0 (62.3%). Elsevier 2016-08-09 /pmc/articles/PMC5024336/ /pubmed/27668083 http://dx.doi.org/10.1016/j.nmni.2016.07.010 Text en © 2016 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Taxonogenomics: Genome of a New Organism
Togo, A.H.
Diop, A.
Dubourg, G.
Nguyen, T.T.
Andrieu, C.
Caputo, A.
Couderc, C.
Fournier, P.-E.
Maraninchi, M.
Valero, R.
Raoult, D.
Million, M.
Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title_full Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title_fullStr Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title_full_unstemmed Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title_short Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient
title_sort butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a french morbidly obese patient
topic Taxonogenomics: Genome of a New Organism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5024336/
https://www.ncbi.nlm.nih.gov/pubmed/27668083
http://dx.doi.org/10.1016/j.nmni.2016.07.010
work_keys_str_mv AT togoah butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT diopa butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT dubourgg butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT nguyentt butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT andrieuc butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT caputoa butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT coudercc butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT fournierpe butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT maraninchim butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT valeror butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT raoultd butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient
AT millionm butyricimonasphoceensisspnovanewanaerobicspeciesisolatedfromthehumangutmicrobiotaofafrenchmorbidlyobesepatient

Ejemplares similares