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Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction

States along the phosphoryl transfer reaction catalyzed by the nucleoside monophosphate kinase UmpK were captured and changes in the conformational heterogeneity of conserved active site arginine side‐chains were quantified by NMR spin‐relaxation methods. In addition to apo and ligand‐bound UmpK, a...

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Autores principales: Zeymer, Cathleen, Werbeck, Nicolas D., Zimmermann, Sabine, Reinstein, Jochen, Hansen, D. Flemming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026167/
https://www.ncbi.nlm.nih.gov/pubmed/27534930
http://dx.doi.org/10.1002/anie.201606238
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author Zeymer, Cathleen
Werbeck, Nicolas D.
Zimmermann, Sabine
Reinstein, Jochen
Hansen, D. Flemming
author_facet Zeymer, Cathleen
Werbeck, Nicolas D.
Zimmermann, Sabine
Reinstein, Jochen
Hansen, D. Flemming
author_sort Zeymer, Cathleen
collection PubMed
description States along the phosphoryl transfer reaction catalyzed by the nucleoside monophosphate kinase UmpK were captured and changes in the conformational heterogeneity of conserved active site arginine side‐chains were quantified by NMR spin‐relaxation methods. In addition to apo and ligand‐bound UmpK, a transition state analog (TSA) complex was utilized to evaluate the extent to which active site conformational entropy contributes to the transition state free energy. The catalytically essential arginine side‐chain guanidino groups were found to be remarkably rigid in the TSA complex, indicating that the enzyme has evolved to restrict the conformational freedom along its reaction path over the energy landscape, which in turn allows the phosphoryl transfer to occur selectively by avoiding side reactions.
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spelling pubmed-50261672016-10-03 Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction Zeymer, Cathleen Werbeck, Nicolas D. Zimmermann, Sabine Reinstein, Jochen Hansen, D. Flemming Angew Chem Int Ed Engl Communications States along the phosphoryl transfer reaction catalyzed by the nucleoside monophosphate kinase UmpK were captured and changes in the conformational heterogeneity of conserved active site arginine side‐chains were quantified by NMR spin‐relaxation methods. In addition to apo and ligand‐bound UmpK, a transition state analog (TSA) complex was utilized to evaluate the extent to which active site conformational entropy contributes to the transition state free energy. The catalytically essential arginine side‐chain guanidino groups were found to be remarkably rigid in the TSA complex, indicating that the enzyme has evolved to restrict the conformational freedom along its reaction path over the energy landscape, which in turn allows the phosphoryl transfer to occur selectively by avoiding side reactions. John Wiley and Sons Inc. 2016-08-18 2016-09-12 /pmc/articles/PMC5026167/ /pubmed/27534930 http://dx.doi.org/10.1002/anie.201606238 Text en © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Communications
Zeymer, Cathleen
Werbeck, Nicolas D.
Zimmermann, Sabine
Reinstein, Jochen
Hansen, D. Flemming
Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title_full Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title_fullStr Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title_full_unstemmed Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title_short Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction
title_sort characterizing active site conformational heterogeneity along the trajectory of an enzymatic phosphoryl transfer reaction
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026167/
https://www.ncbi.nlm.nih.gov/pubmed/27534930
http://dx.doi.org/10.1002/anie.201606238
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