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Determining crystal structures through crowdsourcing and coursework
We show here that computer game players can build high-quality crystal structures. Introduction of a new feature into the computer game Foldit allows players to build and real-space refine structures into electron density maps. To assess the usefulness of this feature, we held a crystallographic mod...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5028414/ https://www.ncbi.nlm.nih.gov/pubmed/27633552 http://dx.doi.org/10.1038/ncomms12549 |
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author | Horowitz, Scott Koepnick, Brian Martin, Raoul Tymieniecki, Agnes Winburn, Amanda A. Cooper, Seth Flatten, Jeff Rogawski, David S. Koropatkin, Nicole M. Hailu, Tsinatkeab T. Jain, Neha Koldewey, Philipp Ahlstrom, Logan S. Chapman, Matthew R. Sikkema, Andrew P. Skiba, Meredith A. Maloney, Finn P. Beinlich, Felix R. M. Popović, Zoran Baker, David Khatib, Firas Bardwell, James C. A. |
author_facet | Horowitz, Scott Koepnick, Brian Martin, Raoul Tymieniecki, Agnes Winburn, Amanda A. Cooper, Seth Flatten, Jeff Rogawski, David S. Koropatkin, Nicole M. Hailu, Tsinatkeab T. Jain, Neha Koldewey, Philipp Ahlstrom, Logan S. Chapman, Matthew R. Sikkema, Andrew P. Skiba, Meredith A. Maloney, Finn P. Beinlich, Felix R. M. Popović, Zoran Baker, David Khatib, Firas Bardwell, James C. A. |
author_sort | Horowitz, Scott |
collection | PubMed |
description | We show here that computer game players can build high-quality crystal structures. Introduction of a new feature into the computer game Foldit allows players to build and real-space refine structures into electron density maps. To assess the usefulness of this feature, we held a crystallographic model-building competition between trained crystallographers, undergraduate students, Foldit players and automatic model-building algorithms. After removal of disordered residues, a team of Foldit players achieved the most accurate structure. Analysing the target protein of the competition, YPL067C, uncovered a new family of histidine triad proteins apparently involved in the prevention of amyloid toxicity. From this study, we conclude that crystallographers can utilize crowdsourcing to interpret electron density information and to produce structure solutions of the highest quality. |
format | Online Article Text |
id | pubmed-5028414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50284142016-09-26 Determining crystal structures through crowdsourcing and coursework Horowitz, Scott Koepnick, Brian Martin, Raoul Tymieniecki, Agnes Winburn, Amanda A. Cooper, Seth Flatten, Jeff Rogawski, David S. Koropatkin, Nicole M. Hailu, Tsinatkeab T. Jain, Neha Koldewey, Philipp Ahlstrom, Logan S. Chapman, Matthew R. Sikkema, Andrew P. Skiba, Meredith A. Maloney, Finn P. Beinlich, Felix R. M. Popović, Zoran Baker, David Khatib, Firas Bardwell, James C. A. Nat Commun Article We show here that computer game players can build high-quality crystal structures. Introduction of a new feature into the computer game Foldit allows players to build and real-space refine structures into electron density maps. To assess the usefulness of this feature, we held a crystallographic model-building competition between trained crystallographers, undergraduate students, Foldit players and automatic model-building algorithms. After removal of disordered residues, a team of Foldit players achieved the most accurate structure. Analysing the target protein of the competition, YPL067C, uncovered a new family of histidine triad proteins apparently involved in the prevention of amyloid toxicity. From this study, we conclude that crystallographers can utilize crowdsourcing to interpret electron density information and to produce structure solutions of the highest quality. Nature Publishing Group 2016-09-16 /pmc/articles/PMC5028414/ /pubmed/27633552 http://dx.doi.org/10.1038/ncomms12549 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Horowitz, Scott Koepnick, Brian Martin, Raoul Tymieniecki, Agnes Winburn, Amanda A. Cooper, Seth Flatten, Jeff Rogawski, David S. Koropatkin, Nicole M. Hailu, Tsinatkeab T. Jain, Neha Koldewey, Philipp Ahlstrom, Logan S. Chapman, Matthew R. Sikkema, Andrew P. Skiba, Meredith A. Maloney, Finn P. Beinlich, Felix R. M. Popović, Zoran Baker, David Khatib, Firas Bardwell, James C. A. Determining crystal structures through crowdsourcing and coursework |
title | Determining crystal structures through crowdsourcing and coursework |
title_full | Determining crystal structures through crowdsourcing and coursework |
title_fullStr | Determining crystal structures through crowdsourcing and coursework |
title_full_unstemmed | Determining crystal structures through crowdsourcing and coursework |
title_short | Determining crystal structures through crowdsourcing and coursework |
title_sort | determining crystal structures through crowdsourcing and coursework |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5028414/ https://www.ncbi.nlm.nih.gov/pubmed/27633552 http://dx.doi.org/10.1038/ncomms12549 |
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