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Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian...

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Autores principales: Wang, Wei, Xia, Minxuan, Chen, Jie, Deng, Fenni, Yuan, Rui, Zhang, Xiaopei, Shen, Fafu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030311/
https://www.ncbi.nlm.nih.gov/pubmed/27672674
http://dx.doi.org/10.1016/j.dib.2016.05.025
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author Wang, Wei
Xia, Minxuan
Chen, Jie
Deng, Fenni
Yuan, Rui
Zhang, Xiaopei
Shen, Fafu
author_facet Wang, Wei
Xia, Minxuan
Chen, Jie
Deng, Fenni
Yuan, Rui
Zhang, Xiaopei
Shen, Fafu
author_sort Wang, Wei
collection PubMed
description The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4].
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spelling pubmed-50303112016-09-26 Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum Wang, Wei Xia, Minxuan Chen, Jie Deng, Fenni Yuan, Rui Zhang, Xiaopei Shen, Fafu Data Brief Data Article The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4]. Elsevier 2016-06-18 /pmc/articles/PMC5030311/ /pubmed/27672674 http://dx.doi.org/10.1016/j.dib.2016.05.025 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Wang, Wei
Xia, Minxuan
Chen, Jie
Deng, Fenni
Yuan, Rui
Zhang, Xiaopei
Shen, Fafu
Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title_full Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title_fullStr Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title_full_unstemmed Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title_short Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
title_sort data set for phylogenetic tree and rampage ramachandran plot analysis of sods in gossypium raimondii and g. arboreum
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030311/
https://www.ncbi.nlm.nih.gov/pubmed/27672674
http://dx.doi.org/10.1016/j.dib.2016.05.025
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