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Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum
The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030311/ https://www.ncbi.nlm.nih.gov/pubmed/27672674 http://dx.doi.org/10.1016/j.dib.2016.05.025 |
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author | Wang, Wei Xia, Minxuan Chen, Jie Deng, Fenni Yuan, Rui Zhang, Xiaopei Shen, Fafu |
author_facet | Wang, Wei Xia, Minxuan Chen, Jie Deng, Fenni Yuan, Rui Zhang, Xiaopei Shen, Fafu |
author_sort | Wang, Wei |
collection | PubMed |
description | The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4]. |
format | Online Article Text |
id | pubmed-5030311 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50303112016-09-26 Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum Wang, Wei Xia, Minxuan Chen, Jie Deng, Fenni Yuan, Rui Zhang, Xiaopei Shen, Fafu Data Brief Data Article The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4]. Elsevier 2016-06-18 /pmc/articles/PMC5030311/ /pubmed/27672674 http://dx.doi.org/10.1016/j.dib.2016.05.025 Text en © 2016 Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Wang, Wei Xia, Minxuan Chen, Jie Deng, Fenni Yuan, Rui Zhang, Xiaopei Shen, Fafu Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title | Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title_full | Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title_fullStr | Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title_full_unstemmed | Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title_short | Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum |
title_sort | data set for phylogenetic tree and rampage ramachandran plot analysis of sods in gossypium raimondii and g. arboreum |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030311/ https://www.ncbi.nlm.nih.gov/pubmed/27672674 http://dx.doi.org/10.1016/j.dib.2016.05.025 |
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