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Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms
Bolidomonas is a genus of picoplanktonic flagellated algae that is closely related to diatoms. Triparma laevis, a species belonging to the Parmales, which are small cells with a siliceous covering, has been shown to form a monophyletic group with Bolidomonas. We isolated several novel strains of Bol...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030691/ https://www.ncbi.nlm.nih.gov/pubmed/27003244 http://dx.doi.org/10.1038/ismej.2016.38 |
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author | Ichinomiya, Mutsuo dos Santos, Adriana Lopes Gourvil, Priscillia Yoshikawa, Shinya Kamiya, Mitsunobu Ohki, Kaori Audic, Stéphane de Vargas, Colomban Noël, Mary-Hélène Vaulot, Daniel Kuwata, Akira |
author_facet | Ichinomiya, Mutsuo dos Santos, Adriana Lopes Gourvil, Priscillia Yoshikawa, Shinya Kamiya, Mitsunobu Ohki, Kaori Audic, Stéphane de Vargas, Colomban Noël, Mary-Hélène Vaulot, Daniel Kuwata, Akira |
author_sort | Ichinomiya, Mutsuo |
collection | PubMed |
description | Bolidomonas is a genus of picoplanktonic flagellated algae that is closely related to diatoms. Triparma laevis, a species belonging to the Parmales, which are small cells with a siliceous covering, has been shown to form a monophyletic group with Bolidomonas. We isolated several novel strains of Bolidophyceae that have permitted further exploration of the diversity of this group using nuclear, plastidial and mitochondrial genes. The resulting phylogenetic data led us to formally emend the taxonomy of this group to include the Parmales within the Bolidophyceae, to combine Bolidomonas within Triparma and to define a novel species, Triparma eleuthera sp. nov. The global distribution of Bolidophyceae was then assessed using environmental sequences available in public databases, as well as a large 18S rRNA V9 metabarcode data set from the Tara Oceans expedition. Bolidophyceans appear ubiquitous throughout the sampled oceans but always constitute a minor component of the phytoplankton community, corresponding to at most ~4% of the metabarcodes from photosynthetic groups (excluding dinoflagellates). They are ~10 times more abundant in the small size fraction (0.8–5 μm) than in larger size fractions. T. eleuthera sp. nov. constitutes the most abundant and most widespread operational taxonomic unit (OTU) followed by T. pacifica, T. mediterranea and the T. laevis clade. The T. mediterranea OTU is characteristic of Mediterranean Sea surface waters and the T. laevis clade OTU is most prevalent in colder waters, in particular off Antarctica. |
format | Online Article Text |
id | pubmed-5030691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50306912016-10-01 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms Ichinomiya, Mutsuo dos Santos, Adriana Lopes Gourvil, Priscillia Yoshikawa, Shinya Kamiya, Mitsunobu Ohki, Kaori Audic, Stéphane de Vargas, Colomban Noël, Mary-Hélène Vaulot, Daniel Kuwata, Akira ISME J Original Article Bolidomonas is a genus of picoplanktonic flagellated algae that is closely related to diatoms. Triparma laevis, a species belonging to the Parmales, which are small cells with a siliceous covering, has been shown to form a monophyletic group with Bolidomonas. We isolated several novel strains of Bolidophyceae that have permitted further exploration of the diversity of this group using nuclear, plastidial and mitochondrial genes. The resulting phylogenetic data led us to formally emend the taxonomy of this group to include the Parmales within the Bolidophyceae, to combine Bolidomonas within Triparma and to define a novel species, Triparma eleuthera sp. nov. The global distribution of Bolidophyceae was then assessed using environmental sequences available in public databases, as well as a large 18S rRNA V9 metabarcode data set from the Tara Oceans expedition. Bolidophyceans appear ubiquitous throughout the sampled oceans but always constitute a minor component of the phytoplankton community, corresponding to at most ~4% of the metabarcodes from photosynthetic groups (excluding dinoflagellates). They are ~10 times more abundant in the small size fraction (0.8–5 μm) than in larger size fractions. T. eleuthera sp. nov. constitutes the most abundant and most widespread operational taxonomic unit (OTU) followed by T. pacifica, T. mediterranea and the T. laevis clade. The T. mediterranea OTU is characteristic of Mediterranean Sea surface waters and the T. laevis clade OTU is most prevalent in colder waters, in particular off Antarctica. Nature Publishing Group 2016-10 2016-03-22 /pmc/articles/PMC5030691/ /pubmed/27003244 http://dx.doi.org/10.1038/ismej.2016.38 Text en Copyright © 2016 International Society for Microbial Ecology http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/ |
spellingShingle | Original Article Ichinomiya, Mutsuo dos Santos, Adriana Lopes Gourvil, Priscillia Yoshikawa, Shinya Kamiya, Mitsunobu Ohki, Kaori Audic, Stéphane de Vargas, Colomban Noël, Mary-Hélène Vaulot, Daniel Kuwata, Akira Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title | Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title_full | Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title_fullStr | Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title_full_unstemmed | Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title_short | Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms |
title_sort | diversity and oceanic distribution of the parmales (bolidophyceae), a picoplanktonic group closely related to diatoms |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030691/ https://www.ncbi.nlm.nih.gov/pubmed/27003244 http://dx.doi.org/10.1038/ismej.2016.38 |
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