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IncucyteDRC: An R package for the dose response analysis of live cell imaging data
We present IncucyteDRC, an R package for the analysis of data from live cell imaging cell proliferation experiments carried out on the Essen Biosciences IncuCyte ZOOM instrument. The package provides a simple workflow for summarising data into a form that can be used to calculate dose response curve...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031130/ https://www.ncbi.nlm.nih.gov/pubmed/27703665 http://dx.doi.org/10.12688/f1000research.8694.1 |
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author | Chapman, Philip J. James, Dominic I. Watson, Amanda J. Hopkins, Gemma V. Waddell, Ian D. Ogilvie, Donald J. |
author_facet | Chapman, Philip J. James, Dominic I. Watson, Amanda J. Hopkins, Gemma V. Waddell, Ian D. Ogilvie, Donald J. |
author_sort | Chapman, Philip J. |
collection | PubMed |
description | We present IncucyteDRC, an R package for the analysis of data from live cell imaging cell proliferation experiments carried out on the Essen Biosciences IncuCyte ZOOM instrument. The package provides a simple workflow for summarising data into a form that can be used to calculate dose response curves and EC50 values for small molecule inhibitors. Data from different cell lines, or cell lines grown under different conditions, can be normalised as to their doubling time. A simple graphical web interface, implemented using shiny, is provided for the benefit of non-R users. The software is potentially useful to any research group studying the impact of small molecule inhibitors on cell proliferation using the IncuCyte ZOOM. |
format | Online Article Text |
id | pubmed-5031130 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-50311302016-10-03 IncucyteDRC: An R package for the dose response analysis of live cell imaging data Chapman, Philip J. James, Dominic I. Watson, Amanda J. Hopkins, Gemma V. Waddell, Ian D. Ogilvie, Donald J. F1000Res Software Tool Article We present IncucyteDRC, an R package for the analysis of data from live cell imaging cell proliferation experiments carried out on the Essen Biosciences IncuCyte ZOOM instrument. The package provides a simple workflow for summarising data into a form that can be used to calculate dose response curves and EC50 values for small molecule inhibitors. Data from different cell lines, or cell lines grown under different conditions, can be normalised as to their doubling time. A simple graphical web interface, implemented using shiny, is provided for the benefit of non-R users. The software is potentially useful to any research group studying the impact of small molecule inhibitors on cell proliferation using the IncuCyte ZOOM. F1000Research 2016-05-23 /pmc/articles/PMC5031130/ /pubmed/27703665 http://dx.doi.org/10.12688/f1000research.8694.1 Text en Copyright: © 2016 Chapman PJ et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Chapman, Philip J. James, Dominic I. Watson, Amanda J. Hopkins, Gemma V. Waddell, Ian D. Ogilvie, Donald J. IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title |
IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title_full |
IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title_fullStr |
IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title_full_unstemmed |
IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title_short |
IncucyteDRC: An R package for the dose response analysis of live cell imaging data |
title_sort | incucytedrc: an r package for the dose response analysis of live cell imaging data |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031130/ https://www.ncbi.nlm.nih.gov/pubmed/27703665 http://dx.doi.org/10.12688/f1000research.8694.1 |
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