Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium

Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here we report the whole-genome shotgun sequence of the strain....

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Autores principales: Zhang, Shumei, Jiang, Wei, Li, Jing, Meng, Liqiang, Cao, Xu, Hu, Jihua, Liu, Yushuai, Chen, Jingyu, Sha, Changqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031281/
https://www.ncbi.nlm.nih.gov/pubmed/27688836
http://dx.doi.org/10.1186/s40793-016-0182-6
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author Zhang, Shumei
Jiang, Wei
Li, Jing
Meng, Liqiang
Cao, Xu
Hu, Jihua
Liu, Yushuai
Chen, Jingyu
Sha, Changqing
author_facet Zhang, Shumei
Jiang, Wei
Li, Jing
Meng, Liqiang
Cao, Xu
Hu, Jihua
Liu, Yushuai
Chen, Jingyu
Sha, Changqing
author_sort Zhang, Shumei
collection PubMed
description Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here we report the whole-genome shotgun sequence of the strain. The genome size of B. amyloliquefaciens TF28 is 3,987,635 bp which consists of 3754 protein-coding genes, 65 tandem repeat sequences, 47 minisatellite DNA, 2 microsatellite DNA, 63 tRNA, 7rRNA, 6 sRNA, 3 prophage and CRISPR domains. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0182-6) contains supplementary material, which is available to authorized users.
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spelling pubmed-50312812016-09-29 Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium Zhang, Shumei Jiang, Wei Li, Jing Meng, Liqiang Cao, Xu Hu, Jihua Liu, Yushuai Chen, Jingyu Sha, Changqing Stand Genomic Sci Short Genome Report Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here we report the whole-genome shotgun sequence of the strain. The genome size of B. amyloliquefaciens TF28 is 3,987,635 bp which consists of 3754 protein-coding genes, 65 tandem repeat sequences, 47 minisatellite DNA, 2 microsatellite DNA, 63 tRNA, 7rRNA, 6 sRNA, 3 prophage and CRISPR domains. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-016-0182-6) contains supplementary material, which is available to authorized users. BioMed Central 2016-09-21 /pmc/articles/PMC5031281/ /pubmed/27688836 http://dx.doi.org/10.1186/s40793-016-0182-6 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Zhang, Shumei
Jiang, Wei
Li, Jing
Meng, Liqiang
Cao, Xu
Hu, Jihua
Liu, Yushuai
Chen, Jingyu
Sha, Changqing
Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title_full Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title_fullStr Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title_full_unstemmed Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title_short Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
title_sort whole genome shotgun sequence of bacillus amyloliquefaciens tf28, a biocontrol entophytic bacterium
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031281/
https://www.ncbi.nlm.nih.gov/pubmed/27688836
http://dx.doi.org/10.1186/s40793-016-0182-6
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