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Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study
BACKGROUND: Compelled by the intuitive appeal of predicting each individual patient’s risk of an outcome, there is a growing interest in risk prediction models. While the statistical methods used to build prediction models are increasingly well understood, the literature offers little insight to res...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031287/ https://www.ncbi.nlm.nih.gov/pubmed/27655140 http://dx.doi.org/10.1186/s12874-016-0223-2 |
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author | Schummers, Laura Himes, Katherine P. Bodnar, Lisa M. Hutcheon, Jennifer A. |
author_facet | Schummers, Laura Himes, Katherine P. Bodnar, Lisa M. Hutcheon, Jennifer A. |
author_sort | Schummers, Laura |
collection | PubMed |
description | BACKGROUND: Compelled by the intuitive appeal of predicting each individual patient’s risk of an outcome, there is a growing interest in risk prediction models. While the statistical methods used to build prediction models are increasingly well understood, the literature offers little insight to researchers seeking to gauge a priori whether a prediction model is likely to perform well for their particular research question. The objective of this study was to inform the development of new risk prediction models by evaluating model performance under a wide range of predictor characteristics. METHODS: Data from all births to overweight or obese women in British Columbia, Canada from 2004 to 2012 (n = 75,225) were used to build a risk prediction model for preeclampsia. The data were then augmented with simulated predictors of the outcome with pre-set prevalence values and univariable odds ratios. We built 120 risk prediction models that included known demographic and clinical predictors, and one, three, or five of the simulated variables. Finally, we evaluated standard model performance criteria (discrimination, risk stratification capacity, calibration, and Nagelkerke’s r(2)) for each model. RESULTS: Findings from our models built with simulated predictors demonstrated the predictor characteristics required for a risk prediction model to adequately discriminate cases from non-cases and to adequately classify patients into clinically distinct risk groups. Several predictor characteristics can yield well performing risk prediction models; however, these characteristics are not typical of predictor-outcome relationships in many population-based or clinical data sets. Novel predictors must be both strongly associated with the outcome and prevalent in the population to be useful for clinical prediction modeling (e.g., one predictor with prevalence ≥20 % and odds ratio ≥8, or 3 predictors with prevalence ≥10 % and odds ratios ≥4). Area under the receiver operating characteristic curve values of >0.8 were necessary to achieve reasonable risk stratification capacity. CONCLUSIONS: Our findings provide a guide for researchers to estimate the expected performance of a prediction model before a model has been built based on the characteristics of available predictors. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12874-016-0223-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5031287 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-50312872016-09-29 Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study Schummers, Laura Himes, Katherine P. Bodnar, Lisa M. Hutcheon, Jennifer A. BMC Med Res Methodol Research Article BACKGROUND: Compelled by the intuitive appeal of predicting each individual patient’s risk of an outcome, there is a growing interest in risk prediction models. While the statistical methods used to build prediction models are increasingly well understood, the literature offers little insight to researchers seeking to gauge a priori whether a prediction model is likely to perform well for their particular research question. The objective of this study was to inform the development of new risk prediction models by evaluating model performance under a wide range of predictor characteristics. METHODS: Data from all births to overweight or obese women in British Columbia, Canada from 2004 to 2012 (n = 75,225) were used to build a risk prediction model for preeclampsia. The data were then augmented with simulated predictors of the outcome with pre-set prevalence values and univariable odds ratios. We built 120 risk prediction models that included known demographic and clinical predictors, and one, three, or five of the simulated variables. Finally, we evaluated standard model performance criteria (discrimination, risk stratification capacity, calibration, and Nagelkerke’s r(2)) for each model. RESULTS: Findings from our models built with simulated predictors demonstrated the predictor characteristics required for a risk prediction model to adequately discriminate cases from non-cases and to adequately classify patients into clinically distinct risk groups. Several predictor characteristics can yield well performing risk prediction models; however, these characteristics are not typical of predictor-outcome relationships in many population-based or clinical data sets. Novel predictors must be both strongly associated with the outcome and prevalent in the population to be useful for clinical prediction modeling (e.g., one predictor with prevalence ≥20 % and odds ratio ≥8, or 3 predictors with prevalence ≥10 % and odds ratios ≥4). Area under the receiver operating characteristic curve values of >0.8 were necessary to achieve reasonable risk stratification capacity. CONCLUSIONS: Our findings provide a guide for researchers to estimate the expected performance of a prediction model before a model has been built based on the characteristics of available predictors. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12874-016-0223-2) contains supplementary material, which is available to authorized users. BioMed Central 2016-09-21 /pmc/articles/PMC5031287/ /pubmed/27655140 http://dx.doi.org/10.1186/s12874-016-0223-2 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Schummers, Laura Himes, Katherine P. Bodnar, Lisa M. Hutcheon, Jennifer A. Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title | Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title_full | Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title_fullStr | Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title_full_unstemmed | Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title_short | Predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
title_sort | predictor characteristics necessary for building a clinically useful risk prediction model: a simulation study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031287/ https://www.ncbi.nlm.nih.gov/pubmed/27655140 http://dx.doi.org/10.1186/s12874-016-0223-2 |
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