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RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
Tetranychus cinnabarinus is an important agricultural pest with a broad host range. We previously identified curcumin as a promising acaricidal compound against T. cinnabarinus. However, the acaricidal mechanism of curcumin remains unknown. In this study, RNA-seq was employed to analyze the transcri...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031819/ https://www.ncbi.nlm.nih.gov/pubmed/27672652 http://dx.doi.org/10.1155/2016/2796260 |
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author | Liu, Xuejiao Wu, Dousheng Zhang, Yongqiang Zhou, Hong Lai, Ting Ding, Wei |
author_facet | Liu, Xuejiao Wu, Dousheng Zhang, Yongqiang Zhou, Hong Lai, Ting Ding, Wei |
author_sort | Liu, Xuejiao |
collection | PubMed |
description | Tetranychus cinnabarinus is an important agricultural pest with a broad host range. We previously identified curcumin as a promising acaricidal compound against T. cinnabarinus. However, the acaricidal mechanism of curcumin remains unknown. In this study, RNA-seq was employed to analyze the transcriptome changes in T. cinnabarinus treated with curcumin or the solvent. A total of 105,706,297 clean sequence reads were generated by sequencing, with more than 90% of the reads successfully mapped to the reference sequence. The RNA-seq identified 111 and 96 differentially expressed genes between curcumin- and solvent-treated mites at 24 and 48 h after treatment, respectively. GO enrichment analysis of differentially expressed genes showed that the cellular process was the dominant group at both time points. Finally, we screened 23 differentially expressed genes that were functionally identical or similar to the targets of common insecticide/acaricides or genes that were associated with mite detoxification and metabolism. Calmodulin, phospholipase A(2), and phospholipase C were activated upon curcumin treatment suggesting that the calcium channel related genes might play important roles in mite's response to curcumin. Overall our results revealed the global transcriptional changes in T. cinnabarinus after curcumin treatment to enable further identification of the targets of curcumin in mites. |
format | Online Article Text |
id | pubmed-5031819 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-50318192016-09-26 RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus Liu, Xuejiao Wu, Dousheng Zhang, Yongqiang Zhou, Hong Lai, Ting Ding, Wei Biomed Res Int Research Article Tetranychus cinnabarinus is an important agricultural pest with a broad host range. We previously identified curcumin as a promising acaricidal compound against T. cinnabarinus. However, the acaricidal mechanism of curcumin remains unknown. In this study, RNA-seq was employed to analyze the transcriptome changes in T. cinnabarinus treated with curcumin or the solvent. A total of 105,706,297 clean sequence reads were generated by sequencing, with more than 90% of the reads successfully mapped to the reference sequence. The RNA-seq identified 111 and 96 differentially expressed genes between curcumin- and solvent-treated mites at 24 and 48 h after treatment, respectively. GO enrichment analysis of differentially expressed genes showed that the cellular process was the dominant group at both time points. Finally, we screened 23 differentially expressed genes that were functionally identical or similar to the targets of common insecticide/acaricides or genes that were associated with mite detoxification and metabolism. Calmodulin, phospholipase A(2), and phospholipase C were activated upon curcumin treatment suggesting that the calcium channel related genes might play important roles in mite's response to curcumin. Overall our results revealed the global transcriptional changes in T. cinnabarinus after curcumin treatment to enable further identification of the targets of curcumin in mites. Hindawi Publishing Corporation 2016 2016-09-08 /pmc/articles/PMC5031819/ /pubmed/27672652 http://dx.doi.org/10.1155/2016/2796260 Text en Copyright © 2016 Xuejiao Liu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Liu, Xuejiao Wu, Dousheng Zhang, Yongqiang Zhou, Hong Lai, Ting Ding, Wei RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus |
title | RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
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title_full | RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
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title_fullStr | RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
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title_full_unstemmed | RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
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title_short | RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
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title_sort | rna-seq analysis reveals candidate targets for curcumin against tetranychus cinnabarinus |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031819/ https://www.ncbi.nlm.nih.gov/pubmed/27672652 http://dx.doi.org/10.1155/2016/2796260 |
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