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A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)

PREMISE OF THE STUDY: Internationally, gardens hold diverse living collections that can be preserved for genomic research. Workflows have been developed for genomic tissue sampling in other taxa (e.g., vertebrates), but are inadequate for plants. We outline a workflow for tissue sampling intended fo...

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Detalles Bibliográficos
Autores principales: Gostel, Morgan R., Kelloff, Carol, Wallick, Kyle, Funk, Vicki A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033361/
https://www.ncbi.nlm.nih.gov/pubmed/27672517
http://dx.doi.org/10.3732/apps.1600039
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author Gostel, Morgan R.
Kelloff, Carol
Wallick, Kyle
Funk, Vicki A.
author_facet Gostel, Morgan R.
Kelloff, Carol
Wallick, Kyle
Funk, Vicki A.
author_sort Gostel, Morgan R.
collection PubMed
description PREMISE OF THE STUDY: Internationally, gardens hold diverse living collections that can be preserved for genomic research. Workflows have been developed for genomic tissue sampling in other taxa (e.g., vertebrates), but are inadequate for plants. We outline a workflow for tissue sampling intended for two audiences: botanists interested in genomics research and garden staff who plan to voucher living collections. METHODS AND RESULTS: Standard herbarium methods are used to collect vouchers, label information and images are entered into a publicly accessible database, and leaf tissue is preserved in silica and liquid nitrogen. A five-step approach for genomic tissue sampling is presented for sampling from living collections according to current best practices. CONCLUSIONS: Collecting genome-quality samples from gardens is an economical and rapid way to make available for scientific research tissue from the diversity of plants on Earth. The Global Genome Initiative will facilitate and lead this endeavor through international partnerships.
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spelling pubmed-50333612016-09-26 A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1) Gostel, Morgan R. Kelloff, Carol Wallick, Kyle Funk, Vicki A. Appl Plant Sci Protocol Note PREMISE OF THE STUDY: Internationally, gardens hold diverse living collections that can be preserved for genomic research. Workflows have been developed for genomic tissue sampling in other taxa (e.g., vertebrates), but are inadequate for plants. We outline a workflow for tissue sampling intended for two audiences: botanists interested in genomics research and garden staff who plan to voucher living collections. METHODS AND RESULTS: Standard herbarium methods are used to collect vouchers, label information and images are entered into a publicly accessible database, and leaf tissue is preserved in silica and liquid nitrogen. A five-step approach for genomic tissue sampling is presented for sampling from living collections according to current best practices. CONCLUSIONS: Collecting genome-quality samples from gardens is an economical and rapid way to make available for scientific research tissue from the diversity of plants on Earth. The Global Genome Initiative will facilitate and lead this endeavor through international partnerships. Botanical Society of America 2016-09-19 /pmc/articles/PMC5033361/ /pubmed/27672517 http://dx.doi.org/10.3732/apps.1600039 Text en © 2016 Gostel et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Protocol Note
Gostel, Morgan R.
Kelloff, Carol
Wallick, Kyle
Funk, Vicki A.
A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title_full A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title_fullStr A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title_full_unstemmed A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title_short A workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
title_sort workflow to preserve genome-quality tissue samples from plants in botanical gardens and arboreta(1)
topic Protocol Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033361/
https://www.ncbi.nlm.nih.gov/pubmed/27672517
http://dx.doi.org/10.3732/apps.1600039
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