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Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from thr...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033363/ https://www.ncbi.nlm.nih.gov/pubmed/27672519 http://dx.doi.org/10.3732/apps.1600042 |
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author | Yamamoto, Takashi Tsuda, Yoshiaki Mori, Gustavo Maruyama Cruz, Mariana Vargas Shinmura, Yoshimi Wee, Alison K. S. Takayama, Koji Asakawa, Takeshi Yamakawa, Takeru Suleiman, Monica Núñez-Farfán, Juan Webb, Edward L. Watano, Yasuyuki Kajita, Tadashi |
author_facet | Yamamoto, Takashi Tsuda, Yoshiaki Mori, Gustavo Maruyama Cruz, Mariana Vargas Shinmura, Yoshimi Wee, Alison K. S. Takayama, Koji Asakawa, Takeshi Yamakawa, Takeru Suleiman, Monica Núñez-Farfán, Juan Webb, Edward L. Watano, Yasuyuki Kajita, Tadashi |
author_sort | Yamamoto, Takashi |
collection | PubMed |
description | PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively. CONCLUSIONS: The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants. |
format | Online Article Text |
id | pubmed-5033363 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-50333632016-09-26 Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) Yamamoto, Takashi Tsuda, Yoshiaki Mori, Gustavo Maruyama Cruz, Mariana Vargas Shinmura, Yoshimi Wee, Alison K. S. Takayama, Koji Asakawa, Takeshi Yamakawa, Takeru Suleiman, Monica Núñez-Farfán, Juan Webb, Edward L. Watano, Yasuyuki Kajita, Tadashi Appl Plant Sci Primer Note PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively. CONCLUSIONS: The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants. Botanical Society of America 2016-09-19 /pmc/articles/PMC5033363/ /pubmed/27672519 http://dx.doi.org/10.3732/apps.1600042 Text en © 2016 Yamamoto et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Yamamoto, Takashi Tsuda, Yoshiaki Mori, Gustavo Maruyama Cruz, Mariana Vargas Shinmura, Yoshimi Wee, Alison K. S. Takayama, Koji Asakawa, Takeshi Yamakawa, Takeru Suleiman, Monica Núñez-Farfán, Juan Webb, Edward L. Watano, Yasuyuki Kajita, Tadashi Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title_full | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title_fullStr | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title_full_unstemmed | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title_short | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) |
title_sort | development and characterization of 27 microsatellite markers for the mangrove fern, acrostichum aureum (pteridaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033363/ https://www.ncbi.nlm.nih.gov/pubmed/27672519 http://dx.doi.org/10.3732/apps.1600042 |
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