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Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)

PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from thr...

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Autores principales: Yamamoto, Takashi, Tsuda, Yoshiaki, Mori, Gustavo Maruyama, Cruz, Mariana Vargas, Shinmura, Yoshimi, Wee, Alison K. S., Takayama, Koji, Asakawa, Takeshi, Yamakawa, Takeru, Suleiman, Monica, Núñez-Farfán, Juan, Webb, Edward L., Watano, Yasuyuki, Kajita, Tadashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033363/
https://www.ncbi.nlm.nih.gov/pubmed/27672519
http://dx.doi.org/10.3732/apps.1600042
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author Yamamoto, Takashi
Tsuda, Yoshiaki
Mori, Gustavo Maruyama
Cruz, Mariana Vargas
Shinmura, Yoshimi
Wee, Alison K. S.
Takayama, Koji
Asakawa, Takeshi
Yamakawa, Takeru
Suleiman, Monica
Núñez-Farfán, Juan
Webb, Edward L.
Watano, Yasuyuki
Kajita, Tadashi
author_facet Yamamoto, Takashi
Tsuda, Yoshiaki
Mori, Gustavo Maruyama
Cruz, Mariana Vargas
Shinmura, Yoshimi
Wee, Alison K. S.
Takayama, Koji
Asakawa, Takeshi
Yamakawa, Takeru
Suleiman, Monica
Núñez-Farfán, Juan
Webb, Edward L.
Watano, Yasuyuki
Kajita, Tadashi
author_sort Yamamoto, Takashi
collection PubMed
description PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively. CONCLUSIONS: The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants.
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spelling pubmed-50333632016-09-26 Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1) Yamamoto, Takashi Tsuda, Yoshiaki Mori, Gustavo Maruyama Cruz, Mariana Vargas Shinmura, Yoshimi Wee, Alison K. S. Takayama, Koji Asakawa, Takeshi Yamakawa, Takeru Suleiman, Monica Núñez-Farfán, Juan Webb, Edward L. Watano, Yasuyuki Kajita, Tadashi Appl Plant Sci Primer Note PREMISE OF THE STUDY: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern, Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. METHODS AND RESULTS: Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively. CONCLUSIONS: The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants. Botanical Society of America 2016-09-19 /pmc/articles/PMC5033363/ /pubmed/27672519 http://dx.doi.org/10.3732/apps.1600042 Text en © 2016 Yamamoto et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Yamamoto, Takashi
Tsuda, Yoshiaki
Mori, Gustavo Maruyama
Cruz, Mariana Vargas
Shinmura, Yoshimi
Wee, Alison K. S.
Takayama, Koji
Asakawa, Takeshi
Yamakawa, Takeru
Suleiman, Monica
Núñez-Farfán, Juan
Webb, Edward L.
Watano, Yasuyuki
Kajita, Tadashi
Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title_full Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title_fullStr Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title_full_unstemmed Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title_short Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)(1)
title_sort development and characterization of 27 microsatellite markers for the mangrove fern, acrostichum aureum (pteridaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033363/
https://www.ncbi.nlm.nih.gov/pubmed/27672519
http://dx.doi.org/10.3732/apps.1600042
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