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Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)

PREMISE OF THE STUDY: Microsatellite markers were identified for Melastoma tetramerum var. tetramerum (Melastomataceae), a critically endangered shrub endemic to the Bonin Islands, to reveal genetic characteristics in wild and restored populations. METHODS AND RESULTS: Using next-generation sequenci...

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Autores principales: Narita, Ayu, Izuno, Ayako, Komaki, Yoshiteru, Tanaka, Takefumi, Murata, Jin, Isagi, Yuji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033365/
https://www.ncbi.nlm.nih.gov/pubmed/27672521
http://dx.doi.org/10.3732/apps.1600053
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author Narita, Ayu
Izuno, Ayako
Komaki, Yoshiteru
Tanaka, Takefumi
Murata, Jin
Isagi, Yuji
author_facet Narita, Ayu
Izuno, Ayako
Komaki, Yoshiteru
Tanaka, Takefumi
Murata, Jin
Isagi, Yuji
author_sort Narita, Ayu
collection PubMed
description PREMISE OF THE STUDY: Microsatellite markers were identified for Melastoma tetramerum var. tetramerum (Melastomataceae), a critically endangered shrub endemic to the Bonin Islands, to reveal genetic characteristics in wild and restored populations. METHODS AND RESULTS: Using next-generation sequencing, 27 microsatellite markers were identified. Twenty of these markers were polymorphic in M. tetramerum var. tetramerum, with two to nine alleles per locus and expected heterozygosity ranging from 0.10 to 0.71. Among the 20 polymorphic markers, 15 were applicable to other closely related taxa, namely M. tetramerum var. pentapetalum, M. candidum var. candidum, and M. candidum var. alessandrense. CONCLUSIONS: These markers can be potentially useful to investigate the genetic diversity, population genetic structure, and reproductive ecology of M. tetramerum var. tetramerum as well as of the three related taxa to provide appropriate genetic information for conservation.
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spelling pubmed-50333652016-09-26 Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1) Narita, Ayu Izuno, Ayako Komaki, Yoshiteru Tanaka, Takefumi Murata, Jin Isagi, Yuji Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite markers were identified for Melastoma tetramerum var. tetramerum (Melastomataceae), a critically endangered shrub endemic to the Bonin Islands, to reveal genetic characteristics in wild and restored populations. METHODS AND RESULTS: Using next-generation sequencing, 27 microsatellite markers were identified. Twenty of these markers were polymorphic in M. tetramerum var. tetramerum, with two to nine alleles per locus and expected heterozygosity ranging from 0.10 to 0.71. Among the 20 polymorphic markers, 15 were applicable to other closely related taxa, namely M. tetramerum var. pentapetalum, M. candidum var. candidum, and M. candidum var. alessandrense. CONCLUSIONS: These markers can be potentially useful to investigate the genetic diversity, population genetic structure, and reproductive ecology of M. tetramerum var. tetramerum as well as of the three related taxa to provide appropriate genetic information for conservation. Botanical Society of America 2016-09-15 /pmc/articles/PMC5033365/ /pubmed/27672521 http://dx.doi.org/10.3732/apps.1600053 Text en © 2016 Narita et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Narita, Ayu
Izuno, Ayako
Komaki, Yoshiteru
Tanaka, Takefumi
Murata, Jin
Isagi, Yuji
Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title_full Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title_fullStr Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title_full_unstemmed Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title_short Twenty novel polymorphic microsatellite primers in the critically endangered Melastoma tetramerum var. tetramerum (Melastomataceae)(1)
title_sort twenty novel polymorphic microsatellite primers in the critically endangered melastoma tetramerum var. tetramerum (melastomataceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033365/
https://www.ncbi.nlm.nih.gov/pubmed/27672521
http://dx.doi.org/10.3732/apps.1600053
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