Cargando…

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline

Single-cell mass cytometry significantly increases the dimensionality of cytometry analysis as compared to fluorescence flow cytometry, providing unprecedented resolution of cellular diversity in tissues. However, analysis and interpretation of these high-dimensional data poses a significant technic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Hao, Lau, Mai Chan, Wong, Michael Thomas, Newell, Evan W., Poidinger, Michael, Chen, Jinmiao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035035/ https://www.ncbi.nlm.nih.gov/pubmed/27662185 http://dx.doi.org/10.1371/journal.pcbi.1005112

Ejemplares similares

CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data
por: Dai, Yuting, et al.
Publicado: (2021)

flowCore: a Bioconductor package for high throughput flow cytometry
por: Hahne, Florian, et al.
Publicado: (2009)

flowClust: a Bioconductor package for automated gating of flow cytometry data
por: Lo, Kenneth, et al.
Publicado: (2009)

RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
por: Popa, Alexandra, et al.
Publicado: (2016)

A ChIP-Seq Data Analysis Pipeline Based on Bioconductor Packages
por: Park, Seung-Jin, et al.
Publicado: (2017)

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
por: Colaprico, Antonio, et al.
Publicado: (2016)

BioNAR: an integrated biological network analysis package in bioconductor
por: McLean, Colin, et al.
Publicado: (2023)

Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines
por: Hu, Qiang, et al.
Publicado: (2021)

Pathview: an R/Bioconductor package for pathway-based data integration and visualization
por: Luo, Weijun, et al.
Publicado: (2013)

Microarray data mining using Bioconductor packages
por: Nie, Haisheng, et al.
Publicado: (2009)

PAA: an R/bioconductor package for biomarker discovery with protein microarrays
por: Turewicz, Michael, et al.
Publicado: (2016)

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
por: Turro, Ernest, et al.
Publicado: (2007)

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data
por: Cava, Claudia, et al.
Publicado: (2017)

monaLisa: an R/Bioconductor package for identifying regulatory motifs
por: Machlab, Dania, et al.
Publicado: (2022)

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data
por: Wang, Zhe, et al.
Publicado: (2019)

GSAR: Bioconductor package for Gene Set analysis in R
por: Rahmatallah, Yasir, et al.
Publicado: (2017)

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens
por: Wang, Xin, et al.
Publicado: (2011)

SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information
por: Wijetunga, N. Ari, et al.
Publicado: (2017)

puma: a Bioconductor package for propagating uncertainty in microarray analysis
por: Pearson, Richard D, et al.
Publicado: (2009)

tRanslatome: an R/Bioconductor package to portray translational control
por: Tebaldi, Toma, et al.
Publicado: (2014)

Chimera: a Bioconductor package for secondary analysis of fusion products
por: Beccuti, Marco, et al.
Publicado: (2014)

clustComp, a bioconductor package for the comparison of clustering results
por: Torrente, Aurora, et al.
Publicado: (2017)

MWASTools: an R/bioconductor package for metabolome-wide association studies
por: Rodriguez-Martinez, Andrea, et al.
Publicado: (2018)

BPRMeth: a flexible Bioconductor package for modelling methylation profiles
por: Kapourani, Chantriolnt-Andreas, et al.
Publicado: (2018)

BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem
por: Su, Shian, et al.
Publicado: (2019)

ideal: an R/Bioconductor package for interactive differential expression analysis
por: Marini, Federico, et al.
Publicado: (2020)

syntenet: an R/Bioconductor package for the inference and analysis of synteny networks
por: Almeida-Silva, Fabricio, et al.
Publicado: (2022)

Synaptome.db: a bioconductor package for synaptic proteomics data
por: Sorokina, Oksana, et al.
Publicado: (2022)

iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor
por: Lee, Kyongryun, et al.
Publicado: (2009)

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
por: González-Beltrán, Alejandra, et al.
Publicado: (2014)

CTCF: an R/bioconductor data package of human and mouse CTCF binding sites
por: Dozmorov, Mikhail G, et al.
Publicado: (2022)

scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor
por: Amarasinghe, Shanika L, et al.
Publicado: (2023)

HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
por: Weber, Lukas M., et al.
Publicado: (2019)

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
por: Toedling, Joern, et al.
Publicado: (2007)

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
por: Toedling, Joern, et al.
Publicado: (2007)

graphite - a Bioconductor package to convert pathway topology to gene network
por: Sales, Gabriele, et al.
Publicado: (2012)

easyRNASeq: a bioconductor package for processing RNA-Seq data
por: Delhomme, Nicolas, et al.
Publicado: (2012)

FlowFP: A Bioconductor Package for Fingerprinting Flow Cytometric Data
por: Rogers, Wade T., et al.
Publicado: (2009)

gtrellis: an R/Bioconductor package for making genome-level Trellis graphics
por: Gu, Zuguang, et al.
Publicado: (2016)

TFBSTools: an R/bioconductor package for transcription factor binding site analysis
por: Tan, Ge, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_mqm9mepl2um4e7ist7cbtp26sp