Cargando…

Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing

BACKGROUND: Cardiomyopathies represent a rare group of disorders often of genetic origin. While approximately 50% of genetic causes are known for other types of cardiomyopathies, the genetic spectrum of restrictive cardiomyopathy (RCM) is largely unknown. The aim of the present study was to identify...

Descripción completa

Detalles Bibliográficos
Autores principales: Kostareva, Anna, Kiselev, Artem, Gudkova, Alexandra, Frishman, Goar, Ruepp, Andreas, Frishman, Dmitrij, Smolina, Natalia, Tarnovskaya, Svetlana, Nilsson, Daniel, Zlotina, Anna, Khodyuchenko, Tatiana, Vershinina, Tatiana, Pervunina, Tatiana, Klyushina, Alexandra, Kozlenok, Andrey, Sjoberg, Gunnar, Golovljova, Irina, Sejersen, Thomas, Shlyakhto, Eugeniy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035084/
https://www.ncbi.nlm.nih.gov/pubmed/27662471
http://dx.doi.org/10.1371/journal.pone.0163362
_version_ 1782455378520309760
author Kostareva, Anna
Kiselev, Artem
Gudkova, Alexandra
Frishman, Goar
Ruepp, Andreas
Frishman, Dmitrij
Smolina, Natalia
Tarnovskaya, Svetlana
Nilsson, Daniel
Zlotina, Anna
Khodyuchenko, Tatiana
Vershinina, Tatiana
Pervunina, Tatiana
Klyushina, Alexandra
Kozlenok, Andrey
Sjoberg, Gunnar
Golovljova, Irina
Sejersen, Thomas
Shlyakhto, Eugeniy
author_facet Kostareva, Anna
Kiselev, Artem
Gudkova, Alexandra
Frishman, Goar
Ruepp, Andreas
Frishman, Dmitrij
Smolina, Natalia
Tarnovskaya, Svetlana
Nilsson, Daniel
Zlotina, Anna
Khodyuchenko, Tatiana
Vershinina, Tatiana
Pervunina, Tatiana
Klyushina, Alexandra
Kozlenok, Andrey
Sjoberg, Gunnar
Golovljova, Irina
Sejersen, Thomas
Shlyakhto, Eugeniy
author_sort Kostareva, Anna
collection PubMed
description BACKGROUND: Cardiomyopathies represent a rare group of disorders often of genetic origin. While approximately 50% of genetic causes are known for other types of cardiomyopathies, the genetic spectrum of restrictive cardiomyopathy (RCM) is largely unknown. The aim of the present study was to identify the genetic background of idiopathic RCM and to compile the obtained genetic variants to the novel signalling pathways using in silico protein network analysis. PATIENTS AND METHODS: We used Illumina MiSeq setup to screen for 108 cardiomyopathy and arrhythmia-associated genes in 24 patients with idiopathic RCM. Pathogenicity of genetic variants was classified according to American College of Medical Genetics and Genomics classification. RESULTS: Pathogenic and likely-pathogenic variants were detected in 13 of 24 patients resulting in an overall genotype-positive rate of 54%. Half of the genotype-positive patients carried a combination of pathogenic, likely-pathogenic variants and variants of unknown significance. The most frequent combination included mutations in sarcomeric and cytoskeletal genes (38%). A bioinformatics approach underlined the mechanotransducing protein networks important for RCM pathogenesis. CONCLUSIONS: Multiple gene mutations were detected in half of the RCM cases, with a combination of sarcomeric and cytoskeletal gene mutations being the most common. Mutations of genes encoding sarcomeric, cytoskeletal, and Z-line-associated proteins appear to have a predominant role in the development of RCM.
format Online
Article
Text
id pubmed-5035084
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-50350842016-10-10 Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing Kostareva, Anna Kiselev, Artem Gudkova, Alexandra Frishman, Goar Ruepp, Andreas Frishman, Dmitrij Smolina, Natalia Tarnovskaya, Svetlana Nilsson, Daniel Zlotina, Anna Khodyuchenko, Tatiana Vershinina, Tatiana Pervunina, Tatiana Klyushina, Alexandra Kozlenok, Andrey Sjoberg, Gunnar Golovljova, Irina Sejersen, Thomas Shlyakhto, Eugeniy PLoS One Research Article BACKGROUND: Cardiomyopathies represent a rare group of disorders often of genetic origin. While approximately 50% of genetic causes are known for other types of cardiomyopathies, the genetic spectrum of restrictive cardiomyopathy (RCM) is largely unknown. The aim of the present study was to identify the genetic background of idiopathic RCM and to compile the obtained genetic variants to the novel signalling pathways using in silico protein network analysis. PATIENTS AND METHODS: We used Illumina MiSeq setup to screen for 108 cardiomyopathy and arrhythmia-associated genes in 24 patients with idiopathic RCM. Pathogenicity of genetic variants was classified according to American College of Medical Genetics and Genomics classification. RESULTS: Pathogenic and likely-pathogenic variants were detected in 13 of 24 patients resulting in an overall genotype-positive rate of 54%. Half of the genotype-positive patients carried a combination of pathogenic, likely-pathogenic variants and variants of unknown significance. The most frequent combination included mutations in sarcomeric and cytoskeletal genes (38%). A bioinformatics approach underlined the mechanotransducing protein networks important for RCM pathogenesis. CONCLUSIONS: Multiple gene mutations were detected in half of the RCM cases, with a combination of sarcomeric and cytoskeletal gene mutations being the most common. Mutations of genes encoding sarcomeric, cytoskeletal, and Z-line-associated proteins appear to have a predominant role in the development of RCM. Public Library of Science 2016-09-23 /pmc/articles/PMC5035084/ /pubmed/27662471 http://dx.doi.org/10.1371/journal.pone.0163362 Text en © 2016 Kostareva et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kostareva, Anna
Kiselev, Artem
Gudkova, Alexandra
Frishman, Goar
Ruepp, Andreas
Frishman, Dmitrij
Smolina, Natalia
Tarnovskaya, Svetlana
Nilsson, Daniel
Zlotina, Anna
Khodyuchenko, Tatiana
Vershinina, Tatiana
Pervunina, Tatiana
Klyushina, Alexandra
Kozlenok, Andrey
Sjoberg, Gunnar
Golovljova, Irina
Sejersen, Thomas
Shlyakhto, Eugeniy
Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title_full Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title_fullStr Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title_full_unstemmed Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title_short Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing
title_sort genetic spectrum of idiopathic restrictive cardiomyopathy uncovered by next-generation sequencing
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035084/
https://www.ncbi.nlm.nih.gov/pubmed/27662471
http://dx.doi.org/10.1371/journal.pone.0163362
work_keys_str_mv AT kostarevaanna geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT kiselevartem geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT gudkovaalexandra geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT frishmangoar geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT rueppandreas geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT frishmandmitrij geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT smolinanatalia geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT tarnovskayasvetlana geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT nilssondaniel geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT zlotinaanna geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT khodyuchenkotatiana geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT vershininatatiana geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT pervuninatatiana geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT klyushinaalexandra geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT kozlenokandrey geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT sjoberggunnar geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT golovljovairina geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT sejersenthomas geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing
AT shlyakhtoeugeniy geneticspectrumofidiopathicrestrictivecardiomyopathyuncoveredbynextgenerationsequencing