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A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle

BACKGROUND: We are increasingly using recording devices with multiple sensors operating at high frequencies to produce large volumes of data which are problematic to interpret. A particularly challenging example comes from studies on animals and humans where researchers use animal-attached accelerom...

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Autores principales: Wilson, Rory P., Holton, Mark D., Walker, James S., Shepard, Emily L. C., Scantlebury, D. Mike, Wilson, Vianney L., Wilson, Gwendoline I., Tysse, Brenda, Gravenor, Mike, Ciancio, Javier, McNarry, Melitta A., Mackintosh, Kelly A., Qasem, Lama, Rosell, Frank, Graf, Patricia M., Quintana, Flavio, Gomez-Laich, Agustina, Sala, Juan-Emilio, Mulvenna, Christina C., Marks, Nicola J., Jones, Mark W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035456/
https://www.ncbi.nlm.nih.gov/pubmed/27688882
http://dx.doi.org/10.1186/s40462-016-0088-3
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author Wilson, Rory P.
Holton, Mark D.
Walker, James S.
Shepard, Emily L. C.
Scantlebury, D. Mike
Wilson, Vianney L.
Wilson, Gwendoline I.
Tysse, Brenda
Gravenor, Mike
Ciancio, Javier
McNarry, Melitta A.
Mackintosh, Kelly A.
Qasem, Lama
Rosell, Frank
Graf, Patricia M.
Quintana, Flavio
Gomez-Laich, Agustina
Sala, Juan-Emilio
Mulvenna, Christina C.
Marks, Nicola J.
Jones, Mark W.
author_facet Wilson, Rory P.
Holton, Mark D.
Walker, James S.
Shepard, Emily L. C.
Scantlebury, D. Mike
Wilson, Vianney L.
Wilson, Gwendoline I.
Tysse, Brenda
Gravenor, Mike
Ciancio, Javier
McNarry, Melitta A.
Mackintosh, Kelly A.
Qasem, Lama
Rosell, Frank
Graf, Patricia M.
Quintana, Flavio
Gomez-Laich, Agustina
Sala, Juan-Emilio
Mulvenna, Christina C.
Marks, Nicola J.
Jones, Mark W.
author_sort Wilson, Rory P.
collection PubMed
description BACKGROUND: We are increasingly using recording devices with multiple sensors operating at high frequencies to produce large volumes of data which are problematic to interpret. A particularly challenging example comes from studies on animals and humans where researchers use animal-attached accelerometers on moving subjects to attempt to quantify behaviour, energy expenditure and condition. RESULTS: The approach taken effectively concatinated three complex lines of acceleration into one visualization that highlighted patterns that were otherwise not obvious. The summation of data points within sphere facets and presentation into histograms on the sphere surface effectively dealt with data occlusion. Further frequency binning of data within facets and representation of these bins as discs on spines radiating from the sphere allowed patterns in dynamic body accelerations (DBA) associated with different postures to become obvious. METHOD: We examine the extent to which novel, gravity-based spherical plots can produce revealing visualizations to incorporate the complexity of such multidimensional acceleration data using a suite of different acceleration-derived metrics with a view to highlighting patterns that are not obvious using current approaches. The basis for the visualisation involved three-dimensional plots of the smoothed acceleration values, which then occupied points on the surface of a sphere. This sphere was divided into facets and point density within each facet expressed as a histogram. Within each facet-dependent histogram, data were also grouped into frequency bins of any desirable parameters, most particularly dynamic body acceleration (DBA), which were then presented as discs on a central spine radiating from the facet. Greater radial distances from the sphere surface indicated greater DBA values while greater disc diameter indicated larger numbers of data points with that particular value. CONCLUSIONS: We indicate how this approach links behaviour and proxies for energetics and can inform our identification and understanding of movement-related processes, highlighting subtle differences in movement and its associated energetics. This approach has ramifications that should expand to areas as disparate as disease identification, lifestyle, sports practice and wild animal ecology. UCT Science Faculty Animal Ethics 2014/V10/PR (valid until 2017). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-016-0088-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-50354562016-09-29 A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle Wilson, Rory P. Holton, Mark D. Walker, James S. Shepard, Emily L. C. Scantlebury, D. Mike Wilson, Vianney L. Wilson, Gwendoline I. Tysse, Brenda Gravenor, Mike Ciancio, Javier McNarry, Melitta A. Mackintosh, Kelly A. Qasem, Lama Rosell, Frank Graf, Patricia M. Quintana, Flavio Gomez-Laich, Agustina Sala, Juan-Emilio Mulvenna, Christina C. Marks, Nicola J. Jones, Mark W. Mov Ecol Methodology Article BACKGROUND: We are increasingly using recording devices with multiple sensors operating at high frequencies to produce large volumes of data which are problematic to interpret. A particularly challenging example comes from studies on animals and humans where researchers use animal-attached accelerometers on moving subjects to attempt to quantify behaviour, energy expenditure and condition. RESULTS: The approach taken effectively concatinated three complex lines of acceleration into one visualization that highlighted patterns that were otherwise not obvious. The summation of data points within sphere facets and presentation into histograms on the sphere surface effectively dealt with data occlusion. Further frequency binning of data within facets and representation of these bins as discs on spines radiating from the sphere allowed patterns in dynamic body accelerations (DBA) associated with different postures to become obvious. METHOD: We examine the extent to which novel, gravity-based spherical plots can produce revealing visualizations to incorporate the complexity of such multidimensional acceleration data using a suite of different acceleration-derived metrics with a view to highlighting patterns that are not obvious using current approaches. The basis for the visualisation involved three-dimensional plots of the smoothed acceleration values, which then occupied points on the surface of a sphere. This sphere was divided into facets and point density within each facet expressed as a histogram. Within each facet-dependent histogram, data were also grouped into frequency bins of any desirable parameters, most particularly dynamic body acceleration (DBA), which were then presented as discs on a central spine radiating from the facet. Greater radial distances from the sphere surface indicated greater DBA values while greater disc diameter indicated larger numbers of data points with that particular value. CONCLUSIONS: We indicate how this approach links behaviour and proxies for energetics and can inform our identification and understanding of movement-related processes, highlighting subtle differences in movement and its associated energetics. This approach has ramifications that should expand to areas as disparate as disease identification, lifestyle, sports practice and wild animal ecology. UCT Science Faculty Animal Ethics 2014/V10/PR (valid until 2017). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-016-0088-3) contains supplementary material, which is available to authorized users. BioMed Central 2016-09-23 /pmc/articles/PMC5035456/ /pubmed/27688882 http://dx.doi.org/10.1186/s40462-016-0088-3 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Wilson, Rory P.
Holton, Mark D.
Walker, James S.
Shepard, Emily L. C.
Scantlebury, D. Mike
Wilson, Vianney L.
Wilson, Gwendoline I.
Tysse, Brenda
Gravenor, Mike
Ciancio, Javier
McNarry, Melitta A.
Mackintosh, Kelly A.
Qasem, Lama
Rosell, Frank
Graf, Patricia M.
Quintana, Flavio
Gomez-Laich, Agustina
Sala, Juan-Emilio
Mulvenna, Christina C.
Marks, Nicola J.
Jones, Mark W.
A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title_full A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title_fullStr A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title_full_unstemmed A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title_short A spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
title_sort spherical-plot solution to linking acceleration metrics with animal performance, state, behaviour and lifestyle
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035456/
https://www.ncbi.nlm.nih.gov/pubmed/27688882
http://dx.doi.org/10.1186/s40462-016-0088-3
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