Cargando…
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they al...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037290/ https://www.ncbi.nlm.nih.gov/pubmed/27729905 http://dx.doi.org/10.3389/fmicb.2016.01521 |
_version_ | 1782455704901124096 |
---|---|
author | DeCastro, María-Eugenia Rodríguez-Belmonte, Esther González-Siso, María-Isabel |
author_facet | DeCastro, María-Eugenia Rodríguez-Belmonte, Esther González-Siso, María-Isabel |
author_sort | DeCastro, María-Eugenia |
collection | PubMed |
description | Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they also represent an important source for novel biocatalysts that can be potentially used in industrial processes. The integrated study of the whole-community DNA from an environment, known as metagenomics, coupled with the development of next generation sequencing (NGS) technologies, has allowed the generation of large amounts of data from thermophiles. In this review, we summarize the main approaches commonly utilized for assessing the taxonomic and functional diversity of thermophiles through metagenomics, including several bioinformatics tools and some metagenome-derived methods to isolate their thermozymes. |
format | Online Article Text |
id | pubmed-5037290 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-50372902016-10-11 Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes DeCastro, María-Eugenia Rodríguez-Belmonte, Esther González-Siso, María-Isabel Front Microbiol Microbiology Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they also represent an important source for novel biocatalysts that can be potentially used in industrial processes. The integrated study of the whole-community DNA from an environment, known as metagenomics, coupled with the development of next generation sequencing (NGS) technologies, has allowed the generation of large amounts of data from thermophiles. In this review, we summarize the main approaches commonly utilized for assessing the taxonomic and functional diversity of thermophiles through metagenomics, including several bioinformatics tools and some metagenome-derived methods to isolate their thermozymes. Frontiers Media S.A. 2016-09-27 /pmc/articles/PMC5037290/ /pubmed/27729905 http://dx.doi.org/10.3389/fmicb.2016.01521 Text en Copyright © 2016 DeCastro, Rodríguez-Belmonte and González-Siso. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology DeCastro, María-Eugenia Rodríguez-Belmonte, Esther González-Siso, María-Isabel Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title | Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title_full | Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title_fullStr | Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title_full_unstemmed | Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title_short | Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes |
title_sort | metagenomics of thermophiles with a focus on discovery of novel thermozymes |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037290/ https://www.ncbi.nlm.nih.gov/pubmed/27729905 http://dx.doi.org/10.3389/fmicb.2016.01521 |
work_keys_str_mv | AT decastromariaeugenia metagenomicsofthermophileswithafocusondiscoveryofnovelthermozymes AT rodriguezbelmonteesther metagenomicsofthermophileswithafocusondiscoveryofnovelthermozymes AT gonzalezsisomariaisabel metagenomicsofthermophileswithafocusondiscoveryofnovelthermozymes |