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Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes

Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they al...

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Autores principales: DeCastro, María-Eugenia, Rodríguez-Belmonte, Esther, González-Siso, María-Isabel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037290/
https://www.ncbi.nlm.nih.gov/pubmed/27729905
http://dx.doi.org/10.3389/fmicb.2016.01521
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author DeCastro, María-Eugenia
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
author_facet DeCastro, María-Eugenia
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
author_sort DeCastro, María-Eugenia
collection PubMed
description Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they also represent an important source for novel biocatalysts that can be potentially used in industrial processes. The integrated study of the whole-community DNA from an environment, known as metagenomics, coupled with the development of next generation sequencing (NGS) technologies, has allowed the generation of large amounts of data from thermophiles. In this review, we summarize the main approaches commonly utilized for assessing the taxonomic and functional diversity of thermophiles through metagenomics, including several bioinformatics tools and some metagenome-derived methods to isolate their thermozymes.
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spelling pubmed-50372902016-10-11 Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes DeCastro, María-Eugenia Rodríguez-Belmonte, Esther González-Siso, María-Isabel Front Microbiol Microbiology Microbial populations living in environments with temperatures above 50°C (thermophiles) have been widely studied, increasing our knowledge in the composition and function of these ecological communities. Since these populations express a broad number of heat-resistant enzymes (thermozymes), they also represent an important source for novel biocatalysts that can be potentially used in industrial processes. The integrated study of the whole-community DNA from an environment, known as metagenomics, coupled with the development of next generation sequencing (NGS) technologies, has allowed the generation of large amounts of data from thermophiles. In this review, we summarize the main approaches commonly utilized for assessing the taxonomic and functional diversity of thermophiles through metagenomics, including several bioinformatics tools and some metagenome-derived methods to isolate their thermozymes. Frontiers Media S.A. 2016-09-27 /pmc/articles/PMC5037290/ /pubmed/27729905 http://dx.doi.org/10.3389/fmicb.2016.01521 Text en Copyright © 2016 DeCastro, Rodríguez-Belmonte and González-Siso. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
DeCastro, María-Eugenia
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title_full Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title_fullStr Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title_full_unstemmed Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title_short Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
title_sort metagenomics of thermophiles with a focus on discovery of novel thermozymes
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037290/
https://www.ncbi.nlm.nih.gov/pubmed/27729905
http://dx.doi.org/10.3389/fmicb.2016.01521
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