Cargando…

Electrical detection and quantification of single and mixed DNA nucleotides in suspension

High speed sequential identification of the building blocks of DNA, (deoxyribonucleotides or nucleotides for short) without labeling or processing in long reads of DNA is the need of the hour. This can be accomplished through exploiting their unique electrical properties. In this study, the four dif...

Descripción completa

Detalles Bibliográficos
Autores principales: Ahmad, Mahmoud Al, Panicker, Neena G., Rizvi, Tahir A., Mustafa, Farah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5039720/
https://www.ncbi.nlm.nih.gov/pubmed/27677329
http://dx.doi.org/10.1038/srep34016
_version_ 1782456119141072896
author Ahmad, Mahmoud Al
Panicker, Neena G.
Rizvi, Tahir A.
Mustafa, Farah
author_facet Ahmad, Mahmoud Al
Panicker, Neena G.
Rizvi, Tahir A.
Mustafa, Farah
author_sort Ahmad, Mahmoud Al
collection PubMed
description High speed sequential identification of the building blocks of DNA, (deoxyribonucleotides or nucleotides for short) without labeling or processing in long reads of DNA is the need of the hour. This can be accomplished through exploiting their unique electrical properties. In this study, the four different types of nucleotides that constitute a DNA molecule were suspended in a buffer followed by performing several types of electrical measurements. These electrical parameters were then used to quantify the suspended DNA nucleotides. Thus, we present a purely electrical counting scheme based on the semiconductor theory that allows one to determine the number of nucleotides in a solution by measuring their capacitance-voltage dependency. The nucleotide count was observed to be similar to the multiplication of the corresponding dopant concentration and debye volume after de-embedding the buffer contribution. The presented approach allows for a fast and label-free quantification of single and mixed nucleotides in a solution.
format Online
Article
Text
id pubmed-5039720
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-50397202016-09-30 Electrical detection and quantification of single and mixed DNA nucleotides in suspension Ahmad, Mahmoud Al Panicker, Neena G. Rizvi, Tahir A. Mustafa, Farah Sci Rep Article High speed sequential identification of the building blocks of DNA, (deoxyribonucleotides or nucleotides for short) without labeling or processing in long reads of DNA is the need of the hour. This can be accomplished through exploiting their unique electrical properties. In this study, the four different types of nucleotides that constitute a DNA molecule were suspended in a buffer followed by performing several types of electrical measurements. These electrical parameters were then used to quantify the suspended DNA nucleotides. Thus, we present a purely electrical counting scheme based on the semiconductor theory that allows one to determine the number of nucleotides in a solution by measuring their capacitance-voltage dependency. The nucleotide count was observed to be similar to the multiplication of the corresponding dopant concentration and debye volume after de-embedding the buffer contribution. The presented approach allows for a fast and label-free quantification of single and mixed nucleotides in a solution. Nature Publishing Group 2016-09-28 /pmc/articles/PMC5039720/ /pubmed/27677329 http://dx.doi.org/10.1038/srep34016 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ahmad, Mahmoud Al
Panicker, Neena G.
Rizvi, Tahir A.
Mustafa, Farah
Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title_full Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title_fullStr Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title_full_unstemmed Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title_short Electrical detection and quantification of single and mixed DNA nucleotides in suspension
title_sort electrical detection and quantification of single and mixed dna nucleotides in suspension
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5039720/
https://www.ncbi.nlm.nih.gov/pubmed/27677329
http://dx.doi.org/10.1038/srep34016
work_keys_str_mv AT ahmadmahmoudal electricaldetectionandquantificationofsingleandmixeddnanucleotidesinsuspension
AT panickerneenag electricaldetectionandquantificationofsingleandmixeddnanucleotidesinsuspension
AT rizvitahira electricaldetectionandquantificationofsingleandmixeddnanucleotidesinsuspension
AT mustafafarah electricaldetectionandquantificationofsingleandmixeddnanucleotidesinsuspension