Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7

We and others have shown the utility of long sequence reads to improve genome assembly quality. In this study, we generated PacBio DNA sequence data to improve the assemblies of draft genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Detalles Bibliográficos
Autores principales: Utturkar, Sagar M., Bayer, Edward A., Borovok, Ilya, Lamed, Raphael, Hurt, Richard A., Land, Miriam L., Klingeman, Dawn M., Elias, Dwayne, Zhou, Jizhong, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2016
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5043559/
https://www.ncbi.nlm.nih.gov/pubmed/27688341
http://dx.doi.org/10.1128/genomeA.01043-16
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author Utturkar, Sagar M.
Bayer, Edward A.
Borovok, Ilya
Lamed, Raphael
Hurt, Richard A.
Land, Miriam L.
Klingeman, Dawn M.
Elias, Dwayne
Zhou, Jizhong
Huntemann, Marcel
Clum, Alicia
Pillay, Manoj
Palaniappan, Krishnaveni
Varghese, Neha
Mikhailova, Natalia
Stamatis, Dimitrios
Reddy, T. B. K.
Ngan, Chew Yee
Daum, Chris
Shapiro, Nicole
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
Brown, Steven D.
author_facet Utturkar, Sagar M.
Bayer, Edward A.
Borovok, Ilya
Lamed, Raphael
Hurt, Richard A.
Land, Miriam L.
Klingeman, Dawn M.
Elias, Dwayne
Zhou, Jizhong
Huntemann, Marcel
Clum, Alicia
Pillay, Manoj
Palaniappan, Krishnaveni
Varghese, Neha
Mikhailova, Natalia
Stamatis, Dimitrios
Reddy, T. B. K.
Ngan, Chew Yee
Daum, Chris
Shapiro, Nicole
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
Brown, Steven D.
author_sort Utturkar, Sagar M.
collection PubMed
description We and others have shown the utility of long sequence reads to improve genome assembly quality. In this study, we generated PacBio DNA sequence data to improve the assemblies of draft genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.
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spelling pubmed-50435592016-10-04 Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7 Utturkar, Sagar M. Bayer, Edward A. Borovok, Ilya Lamed, Raphael Hurt, Richard A. Land, Miriam L. Klingeman, Dawn M. Elias, Dwayne Zhou, Jizhong Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Ngan, Chew Yee Daum, Chris Shapiro, Nicole Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Brown, Steven D. Genome Announc Prokaryotes We and others have shown the utility of long sequence reads to improve genome assembly quality. In this study, we generated PacBio DNA sequence data to improve the assemblies of draft genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7. American Society for Microbiology 2016-09-29 /pmc/articles/PMC5043559/ /pubmed/27688341 http://dx.doi.org/10.1128/genomeA.01043-16 Text en Copyright © 2016 Utturkar et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle Prokaryotes
Utturkar, Sagar M.
Bayer, Edward A.
Borovok, Ilya
Lamed, Raphael
Hurt, Richard A.
Land, Miriam L.
Klingeman, Dawn M.
Elias, Dwayne
Zhou, Jizhong
Huntemann, Marcel
Clum, Alicia
Pillay, Manoj
Palaniappan, Krishnaveni
Varghese, Neha
Mikhailova, Natalia
Stamatis, Dimitrios
Reddy, T. B. K.
Ngan, Chew Yee
Daum, Chris
Shapiro, Nicole
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Woyke, Tanja
Brown, Steven D.
Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title_full Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title_fullStr Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title_full_unstemmed Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title_short Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
title_sort application of long sequence reads to improve genomes for clostridium thermocellum ad2, clostridium thermocellum lqri, and pelosinus fermentans r7
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5043559/
https://www.ncbi.nlm.nih.gov/pubmed/27688341
http://dx.doi.org/10.1128/genomeA.01043-16
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