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Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data
The Guinier region in small-angle X-ray scattering (SAXS) defines the radius of gyration, R (g), and the forward scattering intensity, I(0). In Guinier peak analysis (GPA), the plot of qI(q) versus q (2) transforms the Guinier region into a characteristic peak for visual and automated inspection of...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045725/ https://www.ncbi.nlm.nih.gov/pubmed/27738411 http://dx.doi.org/10.1107/S1600576716010906 |
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author | Putnam, Christopher D. |
author_facet | Putnam, Christopher D. |
author_sort | Putnam, Christopher D. |
collection | PubMed |
description | The Guinier region in small-angle X-ray scattering (SAXS) defines the radius of gyration, R (g), and the forward scattering intensity, I(0). In Guinier peak analysis (GPA), the plot of qI(q) versus q (2) transforms the Guinier region into a characteristic peak for visual and automated inspection of data. Deviations of the peak position from the theoretical position in dimensionless GPA plots can suggest parameter errors, problematic low-resolution data, some kinds of intermolecular interactions or elongated scatters. To facilitate automated analysis by GPA, the elongation ratio (ER), which is the ratio of the areas in the pair-distribution function P(r) after and before the P(r) maximum, was characterized; symmetric samples have ER values around 1, and samples with ER values greater than 5 tend to be outliers in GPA analysis. Use of GPA+ER can be a helpful addition to SAXS data analysis pipelines. |
format | Online Article Text |
id | pubmed-5045725 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-50457252016-10-13 Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data Putnam, Christopher D. J Appl Crystallogr Research Papers The Guinier region in small-angle X-ray scattering (SAXS) defines the radius of gyration, R (g), and the forward scattering intensity, I(0). In Guinier peak analysis (GPA), the plot of qI(q) versus q (2) transforms the Guinier region into a characteristic peak for visual and automated inspection of data. Deviations of the peak position from the theoretical position in dimensionless GPA plots can suggest parameter errors, problematic low-resolution data, some kinds of intermolecular interactions or elongated scatters. To facilitate automated analysis by GPA, the elongation ratio (ER), which is the ratio of the areas in the pair-distribution function P(r) after and before the P(r) maximum, was characterized; symmetric samples have ER values around 1, and samples with ER values greater than 5 tend to be outliers in GPA analysis. Use of GPA+ER can be a helpful addition to SAXS data analysis pipelines. International Union of Crystallography 2016-08-04 /pmc/articles/PMC5045725/ /pubmed/27738411 http://dx.doi.org/10.1107/S1600576716010906 Text en © Christopher D. Putnam 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Putnam, Christopher D. Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title | Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title_full | Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title_fullStr | Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title_full_unstemmed | Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title_short | Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data |
title_sort | guinier peak analysis for visual and automated inspection of small-angle x-ray scattering data |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045725/ https://www.ncbi.nlm.nih.gov/pubmed/27738411 http://dx.doi.org/10.1107/S1600576716010906 |
work_keys_str_mv | AT putnamchristopherd guinierpeakanalysisforvisualandautomatedinspectionofsmallanglexrayscatteringdata |