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The Global Genome Biodiversity Network (GGBN) Data Standard specification

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated acros...

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Autores principales: Droege, G., Barker, K., Seberg, O., Coddington, J., Benson, E., Berendsohn, W. G., Bunk, B., Butler, C., Cawsey, E. M., Deck, J., Döring, M., Flemons, P., Gemeinholzer, B., Güntsch, A., Hollowell, T., Kelbert, P., Kostadinov, I., Kottmann, R., Lawlor, R. T., Lyal, C., Mackenzie-Dodds, J., Meyer, C., Mulcahy, D., Nussbeck, S. Y., O'Tuama, É., Orrell, T., Petersen, G., Robertson, T., Söhngen, C., Whitacre, J., Wieczorek, J., Yilmaz, P., Zetzsche, H., Zhang, Y., Zhou, X.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045859/
https://www.ncbi.nlm.nih.gov/pubmed/27694206
http://dx.doi.org/10.1093/database/baw125
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author Droege, G.
Barker, K.
Seberg, O.
Coddington, J.
Benson, E.
Berendsohn, W. G.
Bunk, B.
Butler, C.
Cawsey, E. M.
Deck, J.
Döring, M.
Flemons, P.
Gemeinholzer, B.
Güntsch, A.
Hollowell, T.
Kelbert, P.
Kostadinov, I.
Kottmann, R.
Lawlor, R. T.
Lyal, C.
Mackenzie-Dodds, J.
Meyer, C.
Mulcahy, D.
Nussbeck, S. Y.
O'Tuama, É.
Orrell, T.
Petersen, G.
Robertson, T.
Söhngen, C.
Whitacre, J.
Wieczorek, J.
Yilmaz, P.
Zetzsche, H.
Zhang, Y.
Zhou, X.
author_facet Droege, G.
Barker, K.
Seberg, O.
Coddington, J.
Benson, E.
Berendsohn, W. G.
Bunk, B.
Butler, C.
Cawsey, E. M.
Deck, J.
Döring, M.
Flemons, P.
Gemeinholzer, B.
Güntsch, A.
Hollowell, T.
Kelbert, P.
Kostadinov, I.
Kottmann, R.
Lawlor, R. T.
Lyal, C.
Mackenzie-Dodds, J.
Meyer, C.
Mulcahy, D.
Nussbeck, S. Y.
O'Tuama, É.
Orrell, T.
Petersen, G.
Robertson, T.
Söhngen, C.
Whitacre, J.
Wieczorek, J.
Yilmaz, P.
Zetzsche, H.
Zhang, Y.
Zhou, X.
author_sort Droege, G.
collection PubMed
description Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today’s ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard. Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard
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spelling pubmed-50458592016-10-03 The Global Genome Biodiversity Network (GGBN) Data Standard specification Droege, G. Barker, K. Seberg, O. Coddington, J. Benson, E. Berendsohn, W. G. Bunk, B. Butler, C. Cawsey, E. M. Deck, J. Döring, M. Flemons, P. Gemeinholzer, B. Güntsch, A. Hollowell, T. Kelbert, P. Kostadinov, I. Kottmann, R. Lawlor, R. T. Lyal, C. Mackenzie-Dodds, J. Meyer, C. Mulcahy, D. Nussbeck, S. Y. O'Tuama, É. Orrell, T. Petersen, G. Robertson, T. Söhngen, C. Whitacre, J. Wieczorek, J. Yilmaz, P. Zetzsche, H. Zhang, Y. Zhou, X. Database (Oxford) Original Article Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today’s ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard. Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard Oxford University Press 2016-10-01 /pmc/articles/PMC5045859/ /pubmed/27694206 http://dx.doi.org/10.1093/database/baw125 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Droege, G.
Barker, K.
Seberg, O.
Coddington, J.
Benson, E.
Berendsohn, W. G.
Bunk, B.
Butler, C.
Cawsey, E. M.
Deck, J.
Döring, M.
Flemons, P.
Gemeinholzer, B.
Güntsch, A.
Hollowell, T.
Kelbert, P.
Kostadinov, I.
Kottmann, R.
Lawlor, R. T.
Lyal, C.
Mackenzie-Dodds, J.
Meyer, C.
Mulcahy, D.
Nussbeck, S. Y.
O'Tuama, É.
Orrell, T.
Petersen, G.
Robertson, T.
Söhngen, C.
Whitacre, J.
Wieczorek, J.
Yilmaz, P.
Zetzsche, H.
Zhang, Y.
Zhou, X.
The Global Genome Biodiversity Network (GGBN) Data Standard specification
title The Global Genome Biodiversity Network (GGBN) Data Standard specification
title_full The Global Genome Biodiversity Network (GGBN) Data Standard specification
title_fullStr The Global Genome Biodiversity Network (GGBN) Data Standard specification
title_full_unstemmed The Global Genome Biodiversity Network (GGBN) Data Standard specification
title_short The Global Genome Biodiversity Network (GGBN) Data Standard specification
title_sort global genome biodiversity network (ggbn) data standard specification
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045859/
https://www.ncbi.nlm.nih.gov/pubmed/27694206
http://dx.doi.org/10.1093/database/baw125
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