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Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045881/ https://www.ncbi.nlm.nih.gov/pubmed/27703847 http://dx.doi.org/10.7717/peerj.2489 |
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author | Szenejko, Magdalena Śmietana, Przemysław Stępień, Edyta |
author_facet | Szenejko, Magdalena Śmietana, Przemysław Stępień, Edyta |
author_sort | Szenejko, Magdalena |
collection | PubMed |
description | BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of P. pratensis. We examined whether these methods could be useful for detecting a possible link between the geographical origin of a given population and its assessed genetic variation. METHODS: The molecular markers RAPD and ISSR were used and their efficiency compared using, inter alia, statistical multivariate methods (UPGMA and PCA). RESULTS: The low value of Dice’s coefficient (0.369) along with the significantly high percentage of polymorphic products indicates a substantial degree of genetic diversity among the studied populations. Our results found a correlation between the geographical origin of the studied populations and their genetic variations. For ISSR, which proved to be the more effective method in that respect, we selected primers with the greatest differentiating powers correlating to geographical origin. DISCUSSION: The populations evaluated in this study were characterized by a high genetic diversity. This seems to confirm the hypothesis that ecotypes of P. pratensis originating from different regions of Central Europe with different terrain structures and habitat conditions can be a source of great genetic variability. |
format | Online Article Text |
id | pubmed-5045881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-50458812016-10-04 Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers Szenejko, Magdalena Śmietana, Przemysław Stępień, Edyta PeerJ Biodiversity BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of P. pratensis. We examined whether these methods could be useful for detecting a possible link between the geographical origin of a given population and its assessed genetic variation. METHODS: The molecular markers RAPD and ISSR were used and their efficiency compared using, inter alia, statistical multivariate methods (UPGMA and PCA). RESULTS: The low value of Dice’s coefficient (0.369) along with the significantly high percentage of polymorphic products indicates a substantial degree of genetic diversity among the studied populations. Our results found a correlation between the geographical origin of the studied populations and their genetic variations. For ISSR, which proved to be the more effective method in that respect, we selected primers with the greatest differentiating powers correlating to geographical origin. DISCUSSION: The populations evaluated in this study were characterized by a high genetic diversity. This seems to confirm the hypothesis that ecotypes of P. pratensis originating from different regions of Central Europe with different terrain structures and habitat conditions can be a source of great genetic variability. PeerJ Inc. 2016-09-27 /pmc/articles/PMC5045881/ /pubmed/27703847 http://dx.doi.org/10.7717/peerj.2489 Text en ©2016 Szenejko et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biodiversity Szenejko, Magdalena Śmietana, Przemysław Stępień, Edyta Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title | Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title_full | Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title_fullStr | Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title_full_unstemmed | Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title_short | Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers |
title_sort | genetic diversity of poa pratensis l. depending on geographical origin and compared with genetic markers |
topic | Biodiversity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045881/ https://www.ncbi.nlm.nih.gov/pubmed/27703847 http://dx.doi.org/10.7717/peerj.2489 |
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