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Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers

BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of...

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Autores principales: Szenejko, Magdalena, Śmietana, Przemysław, Stępień, Edyta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045881/
https://www.ncbi.nlm.nih.gov/pubmed/27703847
http://dx.doi.org/10.7717/peerj.2489
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author Szenejko, Magdalena
Śmietana, Przemysław
Stępień, Edyta
author_facet Szenejko, Magdalena
Śmietana, Przemysław
Stępień, Edyta
author_sort Szenejko, Magdalena
collection PubMed
description BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of P. pratensis. We examined whether these methods could be useful for detecting a possible link between the geographical origin of a given population and its assessed genetic variation. METHODS: The molecular markers RAPD and ISSR were used and their efficiency compared using, inter alia, statistical multivariate methods (UPGMA and PCA). RESULTS: The low value of Dice’s coefficient (0.369) along with the significantly high percentage of polymorphic products indicates a substantial degree of genetic diversity among the studied populations. Our results found a correlation between the geographical origin of the studied populations and their genetic variations. For ISSR, which proved to be the more effective method in that respect, we selected primers with the greatest differentiating powers correlating to geographical origin. DISCUSSION: The populations evaluated in this study were characterized by a high genetic diversity. This seems to confirm the hypothesis that ecotypes of P. pratensis originating from different regions of Central Europe with different terrain structures and habitat conditions can be a source of great genetic variability.
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spelling pubmed-50458812016-10-04 Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers Szenejko, Magdalena Śmietana, Przemysław Stępień, Edyta PeerJ Biodiversity BACKGROUND: Poa pratensis is one of the most common species of meadow grass in Europe. Most cultivars of the species found in Poland were originally derived from its ecotypes. We compared the effectiveness of the RAPD and ISSR methods in assessing the genetic diversity of the selected populations of P. pratensis. We examined whether these methods could be useful for detecting a possible link between the geographical origin of a given population and its assessed genetic variation. METHODS: The molecular markers RAPD and ISSR were used and their efficiency compared using, inter alia, statistical multivariate methods (UPGMA and PCA). RESULTS: The low value of Dice’s coefficient (0.369) along with the significantly high percentage of polymorphic products indicates a substantial degree of genetic diversity among the studied populations. Our results found a correlation between the geographical origin of the studied populations and their genetic variations. For ISSR, which proved to be the more effective method in that respect, we selected primers with the greatest differentiating powers correlating to geographical origin. DISCUSSION: The populations evaluated in this study were characterized by a high genetic diversity. This seems to confirm the hypothesis that ecotypes of P. pratensis originating from different regions of Central Europe with different terrain structures and habitat conditions can be a source of great genetic variability. PeerJ Inc. 2016-09-27 /pmc/articles/PMC5045881/ /pubmed/27703847 http://dx.doi.org/10.7717/peerj.2489 Text en ©2016 Szenejko et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
Szenejko, Magdalena
Śmietana, Przemysław
Stępień, Edyta
Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title_full Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title_fullStr Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title_full_unstemmed Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title_short Genetic diversity of Poa pratensis L. depending on geographical origin and compared with genetic markers
title_sort genetic diversity of poa pratensis l. depending on geographical origin and compared with genetic markers
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045881/
https://www.ncbi.nlm.nih.gov/pubmed/27703847
http://dx.doi.org/10.7717/peerj.2489
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