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Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images
Nuclei detection is often a critical initial step in the development of computer aided diagnosis and prognosis schemes in the context of digital pathology images. While over the last few years, a number of nuclei detection methods have been proposed, most of these approaches make idealistic assumpti...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5046183/ https://www.ncbi.nlm.nih.gov/pubmed/27694950 http://dx.doi.org/10.1038/srep33985 |
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author | Lu, Cheng Xu, Hongming Xu, Jun Gilmore, Hannah Mandal, Mrinal Madabhushi, Anant |
author_facet | Lu, Cheng Xu, Hongming Xu, Jun Gilmore, Hannah Mandal, Mrinal Madabhushi, Anant |
author_sort | Lu, Cheng |
collection | PubMed |
description | Nuclei detection is often a critical initial step in the development of computer aided diagnosis and prognosis schemes in the context of digital pathology images. While over the last few years, a number of nuclei detection methods have been proposed, most of these approaches make idealistic assumptions about the staining quality of the tissue. In this paper, we present a new Multi-Pass Adaptive Voting (MPAV) for nuclei detection which is specifically geared towards images with poor quality staining and noise on account of tissue preparation artifacts. The MPAV utilizes the symmetric property of nuclear boundary and adaptively selects gradient from edge fragments to perform voting for a potential nucleus location. The MPAV was evaluated in three cohorts with different staining methods: Hematoxylin & Eosin, CD31 & Hematoxylin, and Ki-67 and where most of the nuclei were unevenly and imprecisely stained. Across a total of 47 images and nearly 17,700 manually labeled nuclei serving as the ground truth, MPAV was able to achieve a superior performance, with an area under the precision-recall curve (AUC) of 0.73. Additionally, MPAV also outperformed three state-of-the-art nuclei detection methods, a single pass voting method, a multi-pass voting method, and a deep learning based method. |
format | Online Article Text |
id | pubmed-5046183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-50461832016-10-11 Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images Lu, Cheng Xu, Hongming Xu, Jun Gilmore, Hannah Mandal, Mrinal Madabhushi, Anant Sci Rep Article Nuclei detection is often a critical initial step in the development of computer aided diagnosis and prognosis schemes in the context of digital pathology images. While over the last few years, a number of nuclei detection methods have been proposed, most of these approaches make idealistic assumptions about the staining quality of the tissue. In this paper, we present a new Multi-Pass Adaptive Voting (MPAV) for nuclei detection which is specifically geared towards images with poor quality staining and noise on account of tissue preparation artifacts. The MPAV utilizes the symmetric property of nuclear boundary and adaptively selects gradient from edge fragments to perform voting for a potential nucleus location. The MPAV was evaluated in three cohorts with different staining methods: Hematoxylin & Eosin, CD31 & Hematoxylin, and Ki-67 and where most of the nuclei were unevenly and imprecisely stained. Across a total of 47 images and nearly 17,700 manually labeled nuclei serving as the ground truth, MPAV was able to achieve a superior performance, with an area under the precision-recall curve (AUC) of 0.73. Additionally, MPAV also outperformed three state-of-the-art nuclei detection methods, a single pass voting method, a multi-pass voting method, and a deep learning based method. Nature Publishing Group 2016-10-03 /pmc/articles/PMC5046183/ /pubmed/27694950 http://dx.doi.org/10.1038/srep33985 Text en Copyright © 2016, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Lu, Cheng Xu, Hongming Xu, Jun Gilmore, Hannah Mandal, Mrinal Madabhushi, Anant Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title | Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title_full | Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title_fullStr | Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title_full_unstemmed | Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title_short | Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images |
title_sort | multi-pass adaptive voting for nuclei detection in histopathological images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5046183/ https://www.ncbi.nlm.nih.gov/pubmed/27694950 http://dx.doi.org/10.1038/srep33985 |
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