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VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams

BACKGROUND: Visualization of data generated by high-throughput, high-dimensionality experiments is rapidly becoming a rate-limiting step in computational biology. There is an ongoing need to quickly develop high-quality visualizations that can be easily customized or incorporated into automated pipe...

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Autores principales: Lam, Felix, Lalansingh, Christopher M., Babaran, Holly E., Wang, Zhiyuan, Prokopec, Stephenie D., Fox, Natalie S., Boutros, Paul C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048655/
https://www.ncbi.nlm.nih.gov/pubmed/27716034
http://dx.doi.org/10.1186/s12859-016-1281-5
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author Lam, Felix
Lalansingh, Christopher M.
Babaran, Holly E.
Wang, Zhiyuan
Prokopec, Stephenie D.
Fox, Natalie S.
Boutros, Paul C.
author_facet Lam, Felix
Lalansingh, Christopher M.
Babaran, Holly E.
Wang, Zhiyuan
Prokopec, Stephenie D.
Fox, Natalie S.
Boutros, Paul C.
author_sort Lam, Felix
collection PubMed
description BACKGROUND: Visualization of data generated by high-throughput, high-dimensionality experiments is rapidly becoming a rate-limiting step in computational biology. There is an ongoing need to quickly develop high-quality visualizations that can be easily customized or incorporated into automated pipelines. This often requires an interface for manual plot modification, rapid cycles of tweaking visualization parameters, and the generation of graphics code. To facilitate this process for the generation of highly-customizable, high-resolution Venn and Euler diagrams, we introduce VennDiagramWeb: a web application for the widely used VennDiagram R package. VennDiagramWeb is hosted at http://venndiagram.res.oicr.on.ca/. RESULTS: VennDiagramWeb allows real-time modification of Venn and Euler diagrams, with parameter setting through a web interface and immediate visualization of results. It allows customization of essentially all aspects of figures, but also supports integration into computational pipelines via download of R code. Users can upload data and download figures in a range of formats, and there is exhaustive support documentation. CONCLUSIONS: VennDiagramWeb allows the easy creation of Venn and Euler diagrams for computational biologists, and indeed many other fields. Its ability to support real-time graphics changes that are linked to downloadable code that can be integrated into automated pipelines will greatly facilitate the improved visualization of complex datasets. For application support please contact Paul.Boutros@oicr.on.ca. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-016-1281-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-50486552016-10-11 VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams Lam, Felix Lalansingh, Christopher M. Babaran, Holly E. Wang, Zhiyuan Prokopec, Stephenie D. Fox, Natalie S. Boutros, Paul C. BMC Bioinformatics Software BACKGROUND: Visualization of data generated by high-throughput, high-dimensionality experiments is rapidly becoming a rate-limiting step in computational biology. There is an ongoing need to quickly develop high-quality visualizations that can be easily customized or incorporated into automated pipelines. This often requires an interface for manual plot modification, rapid cycles of tweaking visualization parameters, and the generation of graphics code. To facilitate this process for the generation of highly-customizable, high-resolution Venn and Euler diagrams, we introduce VennDiagramWeb: a web application for the widely used VennDiagram R package. VennDiagramWeb is hosted at http://venndiagram.res.oicr.on.ca/. RESULTS: VennDiagramWeb allows real-time modification of Venn and Euler diagrams, with parameter setting through a web interface and immediate visualization of results. It allows customization of essentially all aspects of figures, but also supports integration into computational pipelines via download of R code. Users can upload data and download figures in a range of formats, and there is exhaustive support documentation. CONCLUSIONS: VennDiagramWeb allows the easy creation of Venn and Euler diagrams for computational biologists, and indeed many other fields. Its ability to support real-time graphics changes that are linked to downloadable code that can be integrated into automated pipelines will greatly facilitate the improved visualization of complex datasets. For application support please contact Paul.Boutros@oicr.on.ca. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-016-1281-5) contains supplementary material, which is available to authorized users. BioMed Central 2016-10-03 /pmc/articles/PMC5048655/ /pubmed/27716034 http://dx.doi.org/10.1186/s12859-016-1281-5 Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Lam, Felix
Lalansingh, Christopher M.
Babaran, Holly E.
Wang, Zhiyuan
Prokopec, Stephenie D.
Fox, Natalie S.
Boutros, Paul C.
VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title_full VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title_fullStr VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title_full_unstemmed VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title_short VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
title_sort venndiagramweb: a web application for the generation of highly customizable venn and euler diagrams
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048655/
https://www.ncbi.nlm.nih.gov/pubmed/27716034
http://dx.doi.org/10.1186/s12859-016-1281-5
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