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Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration

Sleep is critical to health and functionality, and several studies have investigated the inherited component of insomnia and other sleep disorders using genome‐wide association studies (GWAS). However, genome‐wide studies focused on sleep duration are less common. Here, we used data from participant...

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Autores principales: Scheinfeldt, Laura B., Gharani, Neda, Kasper, Rachel S., Schmidlen, Tara J., Gordon, Erynn S., Jarvis, Joseph P., Delaney, Susan, Kronenthal, Courtney J., Gerry, Norman P., Christman, Michael F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5049662/
https://www.ncbi.nlm.nih.gov/pubmed/26333835
http://dx.doi.org/10.1002/ajmg.b.32362
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author Scheinfeldt, Laura B.
Gharani, Neda
Kasper, Rachel S.
Schmidlen, Tara J.
Gordon, Erynn S.
Jarvis, Joseph P.
Delaney, Susan
Kronenthal, Courtney J.
Gerry, Norman P.
Christman, Michael F.
author_facet Scheinfeldt, Laura B.
Gharani, Neda
Kasper, Rachel S.
Schmidlen, Tara J.
Gordon, Erynn S.
Jarvis, Joseph P.
Delaney, Susan
Kronenthal, Courtney J.
Gerry, Norman P.
Christman, Michael F.
author_sort Scheinfeldt, Laura B.
collection PubMed
description Sleep is critical to health and functionality, and several studies have investigated the inherited component of insomnia and other sleep disorders using genome‐wide association studies (GWAS). However, genome‐wide studies focused on sleep duration are less common. Here, we used data from participants in the Coriell Personalized Medicine Collaborative (CPMC) (n = 4,401) to examine putative associations between self‐reported sleep duration, demographic and lifestyle variables, and genome‐wide single nucleotide polymorphism (SNP) data to better understand genetic contributions to variation in sleep duration. We employed stepwise ordered logistic regression to select our model and retained the following predictive variables: age, gender, weight, physical activity, physical activity at work, smoking status, alcohol consumption, ethnicity, and ancestry (as measured by principal components analysis) in our association testing. Several of our strongest candidate genes were previously identified in GWAS related to sleep duration (TSHZ2, ABCC9, FBXO15) and narcolepsy (NFATC2, SALL4). In addition, we have identified novel candidate genes for involvement in sleep duration including SORCS1 and ELOVL2. Our results demonstrate that the self‐reported data collected through the CPMC are robust, and our genome‐wide association analysis has identified novel candidate genes involved in sleep duration. More generally, this study contributes to a better understanding of the complexity of human sleep. © 2015 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Published by Wiley Periodicals, Inc.
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spelling pubmed-50496622016-10-06 Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration Scheinfeldt, Laura B. Gharani, Neda Kasper, Rachel S. Schmidlen, Tara J. Gordon, Erynn S. Jarvis, Joseph P. Delaney, Susan Kronenthal, Courtney J. Gerry, Norman P. Christman, Michael F. Am J Med Genet B Neuropsychiatr Genet Research Article Sleep is critical to health and functionality, and several studies have investigated the inherited component of insomnia and other sleep disorders using genome‐wide association studies (GWAS). However, genome‐wide studies focused on sleep duration are less common. Here, we used data from participants in the Coriell Personalized Medicine Collaborative (CPMC) (n = 4,401) to examine putative associations between self‐reported sleep duration, demographic and lifestyle variables, and genome‐wide single nucleotide polymorphism (SNP) data to better understand genetic contributions to variation in sleep duration. We employed stepwise ordered logistic regression to select our model and retained the following predictive variables: age, gender, weight, physical activity, physical activity at work, smoking status, alcohol consumption, ethnicity, and ancestry (as measured by principal components analysis) in our association testing. Several of our strongest candidate genes were previously identified in GWAS related to sleep duration (TSHZ2, ABCC9, FBXO15) and narcolepsy (NFATC2, SALL4). In addition, we have identified novel candidate genes for involvement in sleep duration including SORCS1 and ELOVL2. Our results demonstrate that the self‐reported data collected through the CPMC are robust, and our genome‐wide association analysis has identified novel candidate genes involved in sleep duration. More generally, this study contributes to a better understanding of the complexity of human sleep. © 2015 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Published by Wiley Periodicals, Inc. John Wiley and Sons Inc. 2015-09-03 2015-12 /pmc/articles/PMC5049662/ /pubmed/26333835 http://dx.doi.org/10.1002/ajmg.b.32362 Text en © 2015 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Published by Wiley Periodicals, Inc. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Article
Scheinfeldt, Laura B.
Gharani, Neda
Kasper, Rachel S.
Schmidlen, Tara J.
Gordon, Erynn S.
Jarvis, Joseph P.
Delaney, Susan
Kronenthal, Courtney J.
Gerry, Norman P.
Christman, Michael F.
Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title_full Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title_fullStr Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title_full_unstemmed Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title_short Using the Coriell Personalized Medicine Collaborative Data to conduct a genome‐wide association study of sleep duration
title_sort using the coriell personalized medicine collaborative data to conduct a genome‐wide association study of sleep duration
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5049662/
https://www.ncbi.nlm.nih.gov/pubmed/26333835
http://dx.doi.org/10.1002/ajmg.b.32362
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