Cargando…

Ascertainment bias from imputation methods evaluation in wheat

BACKGROUND: Whole-genome genotyping techniques like Genotyping-by-sequencing (GBS) are being used for genetic studies such as Genome-Wide Association (GWAS) and Genomewide Selection (GS), where different strategies for imputation have been developed. Nevertheless, imputation error may lead to poor p...

Descripción completa

Detalles Bibliográficos
Autores principales:	Brandariz, Sofía P., González Reymúndez, Agustín, Lado, Bettina, Malosetti, Marcos, Garcia, Antonio Augusto Franco, Quincke, Martín, von Zitzewitz, Jarislav, Castro, Marina, Matus, Iván, del Pozo, Alejandro, Castro, Ariel J., Gutiérrez, Lucía
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050639/ https://www.ncbi.nlm.nih.gov/pubmed/27716058 http://dx.doi.org/10.1186/s12864-016-3120-5

Ejemplares similares

Increased Genomic Prediction Accuracy in Wheat Breeding Through Spatial Adjustment of Field Trial Data
por: Lado, Bettina, et al.
Publicado: (2013)

How imputation can mitigate SNP ascertainment Bias
por: Geibel, Johannes, et al.
Publicado: (2021)

Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality
por: Lado, Bettina, et al.
Publicado: (2018)

Machine learning to deal with missing disability status: Ascertainment and imputation of outcomes should be distinguished
por: Kent, David M, et al.
Publicado: (2022)

Resolving kangaroo phylogeny and overcoming retrotransposon ascertainment bias
por: Dodt, William G., et al.
Publicado: (2017)

How array design creates SNP ascertainment bias
por: Geibel, Johannes, et al.
Publicado: (2021)

Ascertainment Bias in Anaphylaxis Safety Data of COVID-19 Vaccines
por: Hourihane, Jonathan O’B., et al.
Publicado: (2021)

Ascertainment bias in the genomic test of positive selection on regulatory sequences
por: Jiang, Daohan, et al.
Publicado: (2023)

Detecting and Removing Ascertainment Bias in Microsatellites from the HGDP-CEPH Panel
por: Eriksson, Anders, et al.
Publicado: (2011)

Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families
por: Park, Suyeon, et al.
Publicado: (2015)

Role of Ascertainment Bias in Determining Case Fatality Rate of COVID-19
por: Smith, Maia P.
Publicado: (2021)

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity
por: Heslot, Nicolas, et al.
Publicado: (2013)

Ascertainment Bias in a Historic Cohort Study of Residents in an Asbestos Manufacturing Community
por: Wortzel, Jeremy D., et al.
Publicado: (2021)

SNP imputation bias reduces effect size determination
por: Khankhanian, Pouya, et al.
Publicado: (2015)

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
por: Didion, John P, et al.
Publicado: (2012)

Ascertainment Bias in TB Treatment Trials: Can Systematic Assessment of Objective Endpoints Solve It?
por: Mitnick, Carole D., et al.
Publicado: (2023)

Appropriate inclusion of interactions was needed to avoid bias in multiple imputation
por: Tilling, Kate, et al.
Publicado: (2016)

Multi-omic signatures identify pan-cancer classes of tumors beyond tissue of origin
por: González-Reymúndez, Agustín, et al.
Publicado: (2020)

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies
por: Malomane, Dorcus Kholofelo, et al.
Publicado: (2018)

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references
por: Alipour, Hadi, et al.
Publicado: (2019)

On the Means of Ascertaining Infanticide
Publicado: (1826)

To Ascertain the Purity of Chloroform
Publicado: (1862)

Dissecting the old Mediterranean durum wheat genetic architecture for phenology, biomass and yield formation by association mapping and QTL meta-analysis
por: Soriano, Jose Miguel, et al.
Publicado: (2017)

Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements
por: Taher, Leila, et al.
Publicado: (2009)

3‐Methylglutaconyl‐CoA hydratase deficiency: When ascertainment bias confounds a biochemical diagnosis
por: Hertzog, Ashley, et al.
Publicado: (2022)

Multiple imputation of missing data under missing at random: including a collider as an auxiliary variable in the imputation model can induce bias
por: Curnow, Elinor, et al.
Publicado: (2023)

Lessons from a GWAS study of a wheat pre-breeding program: pyramiding resistance alleles to Fusarium crown rot
por: Malosetti, Marcos, et al.
Publicado: (2020)

Avoiding bias due to perfect prediction in multiple imputation of incomplete categorical variables()
por: White, Ian R., et al.
Publicado: (2010)

Bias Characterization in Probabilistic Genotype Data and Improved Signal Detection with Multiple Imputation
por: Palmer, Cameron, et al.
Publicado: (2016)

The Ascertainment of Educationally Subnormal Children
por: Hargrove, Aphra
Publicado: (1962)

To Ascertain the Power of a Microscope
Publicado: (1869)

ProtRank: bypassing the imputation of missing values in differential expression analysis of proteomic data
por: Medo, Matúš, et al.
Publicado: (2019)

Imputation of Missing Values for Multi-Biospecimen Metabolomics Studies: Bias and Effects on Statistical Validity
por: Wilson, Machelle D., et al.
Publicado: (2022)

Prediction of years of life after diagnosis of breast cancer using omics and omic-by-treatment interactions
por: González-Reymúndez, Agustín, et al.
Publicado: (2017)

Data partitioning and correction for ascertainment bias reduce the uncertainty of placental mammal divergence times inferred from the morphological clock
por: Caldas, Ian V., et al.
Publicado: (2019)

Estimating infection fatality risk and ascertainment bias of COVID-19 in Osaka, Japan from February 2020 to January 2022
por: Zhang, Tong, et al.
Publicado: (2023)

Application of Population Sequencing (POPSEQ) for Ordering and Imputing Genotyping-by-Sequencing Markers in Hexaploid Wheat
por: Edae, Erena A., et al.
Publicado: (2015)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
por: Zhao, Zhenming, et al.
Publicado: (2008)

Molgenis-impute: imputation pipeline in a box
por: Kanterakis, Alexandros, et al.
Publicado: (2015)

Methods of classifying and ascertaining children's tumours.
por: Leck, I., et al.
Publicado: (1976)

Cannot write session to /tmp/vufind_sessions/sess_1ofv3b4u0nk9rhjhte9i02g749