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Gene Expression Data Classification Using Consensus Independent Component Analysis
We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054104/ https://www.ncbi.nlm.nih.gov/pubmed/18973863 http://dx.doi.org/10.1016/S1672-0229(08)60022-4 |
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author | Zheng, Chun-Hou Huang, De-Shuang Kong, Xiang-Zhen Zhao, Xing-Ming |
author_facet | Zheng, Chun-Hou Huang, De-Shuang Kong, Xiang-Zhen Zhao, Xing-Ming |
author_sort | Zheng, Chun-Hou |
collection | PubMed |
description | We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible. |
format | Online Article Text |
id | pubmed-5054104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-50541042016-10-14 Gene Expression Data Classification Using Consensus Independent Component Analysis Zheng, Chun-Hou Huang, De-Shuang Kong, Xiang-Zhen Zhao, Xing-Ming Genomics Proteomics Bioinformatics Method We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible. Elsevier 2008 2008-10-28 /pmc/articles/PMC5054104/ /pubmed/18973863 http://dx.doi.org/10.1016/S1672-0229(08)60022-4 Text en © 2008 Beijing Institute of Genomics http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open access article under the CC BY-NC-SA license (http://creativecommons.org/licenses/by-nc-sa/3.0/). |
spellingShingle | Method Zheng, Chun-Hou Huang, De-Shuang Kong, Xiang-Zhen Zhao, Xing-Ming Gene Expression Data Classification Using Consensus Independent Component Analysis |
title | Gene Expression Data Classification Using Consensus Independent Component Analysis |
title_full | Gene Expression Data Classification Using Consensus Independent Component Analysis |
title_fullStr | Gene Expression Data Classification Using Consensus Independent Component Analysis |
title_full_unstemmed | Gene Expression Data Classification Using Consensus Independent Component Analysis |
title_short | Gene Expression Data Classification Using Consensus Independent Component Analysis |
title_sort | gene expression data classification using consensus independent component analysis |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054104/ https://www.ncbi.nlm.nih.gov/pubmed/18973863 http://dx.doi.org/10.1016/S1672-0229(08)60022-4 |
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