Cargando…

Gene Expression Data Classification Using Consensus Independent Component Analysis

We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by t...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Chun-Hou, Huang, De-Shuang, Kong, Xiang-Zhen, Zhao, Xing-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054104/
https://www.ncbi.nlm.nih.gov/pubmed/18973863
http://dx.doi.org/10.1016/S1672-0229(08)60022-4
_version_ 1782458527181176832
author Zheng, Chun-Hou
Huang, De-Shuang
Kong, Xiang-Zhen
Zhao, Xing-Ming
author_facet Zheng, Chun-Hou
Huang, De-Shuang
Kong, Xiang-Zhen
Zhao, Xing-Ming
author_sort Zheng, Chun-Hou
collection PubMed
description We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible.
format Online
Article
Text
id pubmed-5054104
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-50541042016-10-14 Gene Expression Data Classification Using Consensus Independent Component Analysis Zheng, Chun-Hou Huang, De-Shuang Kong, Xiang-Zhen Zhao, Xing-Ming Genomics Proteomics Bioinformatics Method We propose a new method for tumor classification from gene expression data, which mainly contains three steps. Firstly, the original DNA microarray gene expression data are modeled by independent component analysis (ICA). Secondly, the most discriminant eigenassays extracted by ICA are selected by the sequential floating forward selection technique. Finally, support vector machine is used to classify the modeling data. To show the validity of the proposed method, we applied it to classify three DNA microarray datasets involving various human normal and tumor tissue samples. The experimental results show that the method is efficient and feasible. Elsevier 2008 2008-10-28 /pmc/articles/PMC5054104/ /pubmed/18973863 http://dx.doi.org/10.1016/S1672-0229(08)60022-4 Text en © 2008 Beijing Institute of Genomics http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open access article under the CC BY-NC-SA license (http://creativecommons.org/licenses/by-nc-sa/3.0/).
spellingShingle Method
Zheng, Chun-Hou
Huang, De-Shuang
Kong, Xiang-Zhen
Zhao, Xing-Ming
Gene Expression Data Classification Using Consensus Independent Component Analysis
title Gene Expression Data Classification Using Consensus Independent Component Analysis
title_full Gene Expression Data Classification Using Consensus Independent Component Analysis
title_fullStr Gene Expression Data Classification Using Consensus Independent Component Analysis
title_full_unstemmed Gene Expression Data Classification Using Consensus Independent Component Analysis
title_short Gene Expression Data Classification Using Consensus Independent Component Analysis
title_sort gene expression data classification using consensus independent component analysis
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054104/
https://www.ncbi.nlm.nih.gov/pubmed/18973863
http://dx.doi.org/10.1016/S1672-0229(08)60022-4
work_keys_str_mv AT zhengchunhou geneexpressiondataclassificationusingconsensusindependentcomponentanalysis
AT huangdeshuang geneexpressiondataclassificationusingconsensusindependentcomponentanalysis
AT kongxiangzhen geneexpressiondataclassificationusingconsensusindependentcomponentanalysis
AT zhaoxingming geneexpressiondataclassificationusingconsensusindependentcomponentanalysis