3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context

Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Geno...

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Detalles Bibliográficos
Autores principales: Wang, Qi, Liang, Qun, Zhang, Xiuqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2009
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054402/
https://www.ncbi.nlm.nih.gov/pubmed/19944387
http://dx.doi.org/10.1016/S1672-0229(08)60043-1
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author Wang, Qi
Liang, Qun
Zhang, Xiuqing
author_facet Wang, Qi
Liang, Qun
Zhang, Xiuqing
author_sort Wang, Qi
collection PubMed
description Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner, a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The program is freely available (under an LGPL licence) at http://sourceforge.net/projects/dgenometuner.
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spelling pubmed-50544022016-10-14 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context Wang, Qi Liang, Qun Zhang, Xiuqing Genomics Proteomics Bioinformatics Application Note Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner, a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The program is freely available (under an LGPL licence) at http://sourceforge.net/projects/dgenometuner. Elsevier 2009-09 2009-11-25 /pmc/articles/PMC5054402/ /pubmed/19944387 http://dx.doi.org/10.1016/S1672-0229(08)60043-1 Text en © 2009 Beijing Institute of Genomics http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open access article under the CC BY-NC-SA license (http://creativecommons.org/licenses/by-nc-sa/3.0/).
spellingShingle Application Note
Wang, Qi
Liang, Qun
Zhang, Xiuqing
3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title_full 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title_fullStr 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title_full_unstemmed 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title_short 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context
title_sort 3d genome tuner: compare multiple circular genomes in a 3d context
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054402/
https://www.ncbi.nlm.nih.gov/pubmed/19944387
http://dx.doi.org/10.1016/S1672-0229(08)60043-1
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