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Large-Scale Analyses of Glycosylation in Cellulases

Cellulases are important glycosyl hydrolases (GHs) that hydrolyze cellulose polymers into smaller oligosaccharides by breaking the cellulose β (1→4) bonds, and they are widely used to produce cellulosic ethanol from the plant biomass. N-linked and O-linked glycosylations were proposed to impact the...

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Autores principales: Zhou, Fengfeng, Olman, Victor, Xu, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054413/
https://www.ncbi.nlm.nih.gov/pubmed/20172492
http://dx.doi.org/10.1016/S1672-0229(08)60049-2
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author Zhou, Fengfeng
Olman, Victor
Xu, Ying
author_facet Zhou, Fengfeng
Olman, Victor
Xu, Ying
author_sort Zhou, Fengfeng
collection PubMed
description Cellulases are important glycosyl hydrolases (GHs) that hydrolyze cellulose polymers into smaller oligosaccharides by breaking the cellulose β (1→4) bonds, and they are widely used to produce cellulosic ethanol from the plant biomass. N-linked and O-linked glycosylations were proposed to impact the catalytic efficiency, cellulose binding affinity and the stability of cellulases based on observations of individual cellulases. As far as we know, there has not been any systematic analysis of the distributions of N-linked and O-linked glycosylated residues in cellulases, mainly due to the limited annotations of the relevant functional domains and the glycosylated residues. We have computationally annotated the functional domains and glycosylated residues in cellulases, and conducted a systematic analysis of the distributions of the N-linked and O-linked glycosylated residues in these enzymes. Many N-linked glycosylated residues were known to be in the GH domains of cellulases, but they are there probably just by chance, since the GH domain usually occupies more than half of the sequence length of a cellulase. Our analysis indicates that the O-linked glycosylated residues are significantly enriched in the linker regions between the carbohydrate binding module (CBM) domains and GH domains of cellulases. Possible mechanisms are discussed.
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spelling pubmed-50544132016-10-14 Large-Scale Analyses of Glycosylation in Cellulases Zhou, Fengfeng Olman, Victor Xu, Ying Genomics Proteomics Bioinformatics Article Cellulases are important glycosyl hydrolases (GHs) that hydrolyze cellulose polymers into smaller oligosaccharides by breaking the cellulose β (1→4) bonds, and they are widely used to produce cellulosic ethanol from the plant biomass. N-linked and O-linked glycosylations were proposed to impact the catalytic efficiency, cellulose binding affinity and the stability of cellulases based on observations of individual cellulases. As far as we know, there has not been any systematic analysis of the distributions of N-linked and O-linked glycosylated residues in cellulases, mainly due to the limited annotations of the relevant functional domains and the glycosylated residues. We have computationally annotated the functional domains and glycosylated residues in cellulases, and conducted a systematic analysis of the distributions of the N-linked and O-linked glycosylated residues in these enzymes. Many N-linked glycosylated residues were known to be in the GH domains of cellulases, but they are there probably just by chance, since the GH domain usually occupies more than half of the sequence length of a cellulase. Our analysis indicates that the O-linked glycosylated residues are significantly enriched in the linker regions between the carbohydrate binding module (CBM) domains and GH domains of cellulases. Possible mechanisms are discussed. Elsevier 2009-12 2010-02-19 /pmc/articles/PMC5054413/ /pubmed/20172492 http://dx.doi.org/10.1016/S1672-0229(08)60049-2 Text en © 2009 Beijing Institute of Genomics http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open access article under the CC BY-NC-SA license (http://creativecommons.org/licenses/by-nc-sa/3.0/).
spellingShingle Article
Zhou, Fengfeng
Olman, Victor
Xu, Ying
Large-Scale Analyses of Glycosylation in Cellulases
title Large-Scale Analyses of Glycosylation in Cellulases
title_full Large-Scale Analyses of Glycosylation in Cellulases
title_fullStr Large-Scale Analyses of Glycosylation in Cellulases
title_full_unstemmed Large-Scale Analyses of Glycosylation in Cellulases
title_short Large-Scale Analyses of Glycosylation in Cellulases
title_sort large-scale analyses of glycosylation in cellulases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054413/
https://www.ncbi.nlm.nih.gov/pubmed/20172492
http://dx.doi.org/10.1016/S1672-0229(08)60049-2
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