Cargando…

SMS 2.0: An Updated Database to Study the Structural Plasticity of Short Peptide Fragments in Non-redundant Proteins

The function of a protein molecule is greatly influenced by its three-dimensional (3D) structure and therefore structure prediction will help identify its biological function. We have updated Sequence, Motif and Structure (SMS), the database of structurally rigid peptide fragments, by combining amin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ravella, Dheeraj, Kumar, Muthukumarasamy Uthaya, Sherlin, Durairaj, Shankar, Mani, Vaishnavi, Marthandan Kirti, Sekar, Kanagaraj
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2012
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054494/ https://www.ncbi.nlm.nih.gov/pubmed/22449400 http://dx.doi.org/10.1016/S1672-0229(11)60032-6

Ejemplares similares

Aromatic-aromatic interactions in structures of proteins and protein-DNA complexes: a study based on orientation and distance
por: Anjana, Ramnath, et al.
Publicado: (2012)

A method to find palindromes in nucleic acid sequences
por: Anjana, Ramnath, et al.
Publicado: (2013)

Homepeptide Repeats: Implications for Protein Structure, Function and Evolution
por: Uthayakumar, Muthukumarasamy, et al.
Publicado: (2012)

PPS: A computing engine to find Palindromes in all Protein sequences
por: Ahmed, Zameer, et al.
Publicado: (2014)

Fuzzy Logic for Elimination of Redundant Information of Microarray Data
por: Huerta, Edmundo Bonilla, et al.
Publicado: (2008)

Guiding Ebola patients to suitable health facilities: an SMS-based approach
por: Trad, Mohamad-Ali, et al.
Publicado: (2015)

SCOREM: statistical consolidation of redundant expression measures
por: Schneider, Stephanie, et al.
Publicado: (2012)

Differential Activities of the Two Closely Related Withanolides, Withaferin A and Withanone: Bioinformatics and Experimental Evidences
por: Vaishnavi, Kirti, et al.
Publicado: (2012)

Prioritizing tests of epistasis through hierarchical representation of genomic redundancies
por: Cowman, Tyler, et al.
Publicado: (2017)

Do we see what we should see? Describing non-covalent interactions in protein structures including precision
por: Gurusaran, Manickam, et al.
Publicado: (2013)

DSmishSMS-A System to Detect Smishing SMS
por: Mishra, Sandhya, et al.
Publicado: (2021)

TrimerDimer: an oligonucleotide-based saturation mutagenesis approach that removes redundant and stop codons
por: Gaytán, Paul, et al.
Publicado: (2009)

Improving RNA-Seq expression estimates by correcting for fragment bias
por: Roberts, Adam, et al.
Publicado: (2011)

Fragrep: An Efficient Search Tool for Fragmented Patterns in Genomic Sequences
por: Mosig, Axel, et al.
Publicado: (2006)

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections
por: Castro-Mondragon, Jaime Abraham, et al.
Publicado: (2017)

Identification of soluble protein fragments by gene fragmentation and genetic selection
por: Dyson, Michael R., et al.
Publicado: (2008)

Plasticity and Redundancy in Proteins Important for Toxoplasma Invasion
por: Frénal, Karine, et al.
Publicado: (2015)

SMASH, a fragmentation and sequencing method for genomic copy number analysis
por: Wang, Zihua, et al.
Publicado: (2016)

Infusion Mass Spectrometric Analysis of Sphingomyelin Species in Dairy With Lithium-Mediated Fragmentation
por: Magnuson, Andrew, et al.
Publicado: (2022)

Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae
por: Boyer, Jeanne, et al.
Publicado: (2004)

Assessment of Sperm Deoxyribose Nucleic Acid Fragmentation Using Sperm Chromatin Dispersion Assay
por: Pratap, Harsha, et al.
Publicado: (2017)

SMS Messaging Applications
por: Pero, Nicola
Publicado: (2009)

SMS 2 administration
por: Lubanski, Mike, et al.
Publicado: (2000)

SMS Scans in ATLAS
por: Yamanaka, Takashi
Publicado: (2013)

SMS Scans in CMS
por: Strobbe, Nadja
Publicado: (2013)

Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
por: Manikandan, Karuppasamy, et al.
Publicado: (2008)

Exploring redundant research into the effect of tranexamic acid on surgical bleeding: further analysis of a systematic review of randomised controlled trials
por: Ker, Katharine, et al.
Publicado: (2015)

A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language
por: Herzog, Ronny, et al.
Publicado: (2011)

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
por: Adey, Andrew, et al.
Publicado: (2010)

HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution
por: Cameron, Christopher JF, et al.
Publicado: (2020)

CRAG: de novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing
por: Zhou, Xionghui, et al.
Publicado: (2022)

Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin
por: Sun, Kun, et al.
Publicado: (2019)

Reconstructing double-stranded DNA fragments on a single-molecule level reveals patterns of degradation in ancient samples
por: Bokelmann, Lukas, et al.
Publicado: (2020)

Characteristic fragmentation of polyunsaturated fatty acids with allylic vicinal diols in positive-ion LC/ESI-MS/MS
por: Zhu, Huibin, et al.
Publicado: (2023)

Assisted large fragment insertion by Red/ET-recombination (ALFIRE)—an alternative and enhanced method for large fragment recombineering
por: Rivero-Müller, Adolfo, et al.
Publicado: (2007)

High-throughput sequencing of EcoWI restriction fragments maps the genome-wide landscape of phosphorothioate modification at base resolution
por: Yang, Weiwei, et al.
Publicado: (2022)

Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses
por: Swetha, Rayapadi G., et al.
Publicado: (2016)

SMS Text Messages for Parents for the Prevention of Child Drowning in Bangladesh: Acceptability Study
por: Hossain, Md Mosharaf, et al.
Publicado: (2020)

Essential Plasticity and Redundancy of Metabolism Unveiled by Synthetic Lethality Analysis
por: Güell, Oriol, et al.
Publicado: (2014)

Physiology of Cerebellar Reserve: Redundancy and Plasticity of a Modular Machine
por: Mitoma, Hiroshi, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_gcvoprn1fcij60nhtr0vm7sc6v